Align IGP synthase cyclase subunit; EC 4.1.3.- (characterized)
to candidate 7024670 Shewana3_1848 imidazole glycerol phosphate synthase subunit HisF (RefSeq)
Query= CharProtDB::CH_024847 (258 letters) >FitnessBrowser__ANA3:7024670 Length = 257 Score = 388 bits (996), Expect = e-113 Identities = 189/256 (73%), Positives = 219/256 (85%) Query: 1 MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAKRYAEEGADELVFYDITASSDGRV 60 MLAKRI+PCLDV+DG VVKGVQFRNHEI+GDIVPLA RYA EGADELVFYDITAS+ RV Sbjct: 1 MLAKRIVPCLDVKDGCVVKGVQFRNHEIVGDIVPLAARYAAEGADELVFYDITASAHDRV 60 Query: 61 VDKSWVSRVAEVIDIPFCVAGGIKSLEDAAKILSFGADKISINSPALADPTLITRLADRF 120 VDKSWVSRVAE IDIPFCVAGGIK++ A ++L+FGADKIS+NSPAL+DP+LI+RL D F Sbjct: 61 VDKSWVSRVAEQIDIPFCVAGGIKTIGQARELLAFGADKISVNSPALSDPSLISRLQDEF 120 Query: 121 GVQCIVVGIDTWYDAETGKYHVNQYTGDESRTRVTQWETLDWVQEVQKRGAGEIVLNMMN 180 G QCIV+GID++YDA + Y V Q+TGDE+ T+ T W T DWV+EVQKRG GEIVLN+MN Sbjct: 121 GRQCIVIGIDSFYDAASDSYKVKQFTGDEAATKETAWYTQDWVEEVQKRGCGEIVLNVMN 180 Query: 181 QDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIIN 240 QDGVR GYD++QL VR++C VPLIASGGAGTM HF + F +A VD ALAASVFHK IIN Sbjct: 181 QDGVRGGYDIKQLSLVRQLCDVPLIASGGAGTMTHFRDVFIEAKVDAALAASVFHKAIIN 240 Query: 241 IGELKAYLATQGVEIR 256 IGELK YLA +G+ IR Sbjct: 241 IGELKQYLAAEGIAIR 256 Lambda K H 0.321 0.138 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 320 Number of extensions: 8 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 258 Length of database: 257 Length adjustment: 24 Effective length of query: 234 Effective length of database: 233 Effective search space: 54522 Effective search space used: 54522 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate 7024670 Shewana3_1848 (imidazole glycerol phosphate synthase subunit HisF (RefSeq))
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)
../bin/blast/fastacmd -i /tmp/list.7777.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.7777.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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