GapMind for Amino acid biosynthesis

 

Alignments for a candidate for ilvE in Shewanella sp. ANA-3

Align Branched-chain-amino-acid aminotransferase 2; BCAT 2; Vegetative protein 85; VEG85; EC 2.6.1.42 (characterized)
to candidate 7026697 Shewana3_3830 branched-chain amino acid aminotransferase (RefSeq)

Query= SwissProt::P39576
         (363 letters)



>FitnessBrowser__ANA3:7026697
          Length = 363

 Score =  287 bits (734), Expect = 4e-82
 Identities = 152/347 (43%), Positives = 218/347 (62%), Gaps = 6/347 (1%)

Query: 13  TKKPKPDPNQLSFGRVFTDHMFVMDYAADKGWYDPRIIPYQPLSMDPAAMVYHYGQTVFE 72
           T++ KP+ N + FG + TDHMF+MDY  D  W DPRI+PY P  M P AM  HYGQ++FE
Sbjct: 15  TEQFKPEGN-VGFGSLRTDHMFLMDYR-DGEWRDPRIVPYGPFEMAPGAMALHYGQSIFE 72

Query: 73  GLKAYVSEDDHVLLFRPEKNMERLNQSNDRLCIPQIDEEQVLEGLKQLVAIDKDWIPNAE 132
           G KA++ ED  +  FR  KN ER+N+S D +CIP IDE+  ++ +  L+ +D+ W P  E
Sbjct: 73  GAKAFMHEDGEIYTFRINKNAERMNRSADIVCIPNIDEQMQIDAINALIDVDRLWFPMQE 132

Query: 133 GTSLYIRPFIIATEPFLGVAASHTYKLLIILSPVGSYYKEGI-KPVKIAVESEFVRAVKG 191
           G  LYIRPFI ATE  L V+ S  Y   ++LSP G+YY  G+ K +++ +   + RAV G
Sbjct: 133 GACLYIRPFIFATEDRLSVSPSTRYTFCVVLSPSGAYYAAGVNKGIRLLISKTYHRAVSG 192

Query: 192 GTGNAKTAGNYASSLKAQQVAEEKGFSQVLWLDGIEKKYIEEVGSMNIFFKI-NGEIVTP 250
           GTG +K AGNYA+SL+A + A + G SQVL+LD    + IEE G+MN F  + +G ++ P
Sbjct: 193 GTGASKAAGNYAASLRAGKAAAQFGASQVLYLDA-NNQQIEEAGAMNHFHILKDGTVIIP 251

Query: 251 MLNGSILEGITRNSVIALLKHWGLQVSERKIAIDEVIQAHKDGILEEAFGTGTAAVISPV 310
               +IL+ IT  S++ L +  G +V +  + +D+ I   + G + EA G GTAAV+S V
Sbjct: 252 TFTDTILKSITSQSIMELGELLGCEVRQETVMLDKFIADIESGEIIEAGGFGTAAVVSAV 311

Query: 311 GELIWQD-ETLSINNGETGEIAKKLYDTITGIQKGAVADEFGWTTEV 356
           G  I++D   +++ NGE GE  +++Y   T IQKG +    GW   V
Sbjct: 312 GSYIFEDGRVVTVGNGEVGEHIQRIYKLYTDIQKGHIQGPDGWVKRV 358


Lambda     K      H
   0.316    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 361
Number of extensions: 16
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 363
Length adjustment: 29
Effective length of query: 334
Effective length of database: 334
Effective search space:   111556
Effective search space used:   111556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate 7026697 Shewana3_3830 (branched-chain amino acid aminotransferase (RefSeq))
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))

Software error:

../bin/blast/fastacmd -i /tmp/list.23113.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23113.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.