GapMind for Amino acid biosynthesis

 

Alignments for a candidate for PAH in Shewanella sp. ANA-3

Align Phenylalanine 4-monooxygenase (EC 1.14.16.1) (characterized)
to candidate 7025630 Shewana3_2781 phenylalanine 4-monooxygenase (RefSeq)

Query= reanno::MR1:200831
         (271 letters)



>FitnessBrowser__ANA3:7025630
          Length = 271

 Score =  530 bits (1366), Expect = e-155
 Identities = 258/271 (95%), Positives = 262/271 (96%)

Query: 1   MTIDTVHTAPYVARSADDSGYIHYPQEEHDIWRQLYARQAVNLPGRACKEYLQGLDALAM 60
           MT +  HTAPYVARSADDSGYIHYPQEEHDIW QLYARQAV LPGRACKEYLQGL ALAM
Sbjct: 1   MTKEIAHTAPYVARSADDSGYIHYPQEEHDIWSQLYARQAVKLPGRACKEYLQGLAALAM 60

Query: 61  PKDRIPQLAEIDKVLMATTGWKTADVPALISFGRFFELLANKEFPVATFIRRKEEFDYLQ 120
           PKDRIPQLAEIDKVL ATTGWKTA VPALISFGRFFELLANKEFPVATFIRRKEEFDYLQ
Sbjct: 61  PKDRIPQLAEIDKVLQATTGWKTAAVPALISFGRFFELLANKEFPVATFIRRKEEFDYLQ 120

Query: 121 EPDIFHEIFGHCPLLTNPSFAHFSHMYGQLGLNASKEDRVFLARLYWFTVEFGLLKPQEG 180
           EPDIFHEIFGHCPLLTNPSFAHFSH+YGQLGLNASKEDRVFLARLYWFTVEFGLLKPQ+G
Sbjct: 121 EPDIFHEIFGHCPLLTNPSFAHFSHIYGQLGLNASKEDRVFLARLYWFTVEFGLLKPQDG 180

Query: 181 ELCIYGGGILSSPGETLYAMESQVPERKPFDLLDVLRTPYRIDIMQPIYYVIEHIDVLDE 240
           ELCIYGGGILSSPGETLYAMESQVPERKPFDLLDVLRTPYRIDIMQPIYYVIEHID+LDE
Sbjct: 181 ELCIYGGGILSSPGETLYAMESQVPERKPFDLLDVLRTPYRIDIMQPIYYVIEHIDMLDE 240

Query: 241 IAKMDIMAYVAKARQLGLFAPKYPPKAKKAS 271
           IAKMDIMAYVAKARQLGLFAPKYPPK KKAS
Sbjct: 241 IAKMDIMAYVAKARQLGLFAPKYPPKTKKAS 271


Lambda     K      H
   0.323    0.140    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 386
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 271
Length adjustment: 25
Effective length of query: 246
Effective length of database: 246
Effective search space:    60516
Effective search space used:    60516
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)

Align candidate 7025630 Shewana3_2781 (phenylalanine 4-monooxygenase (RefSeq))
to HMM TIGR01267 (phhA: phenylalanine-4-hydroxylase (EC 1.14.16.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.1644.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1644.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.