Align argininosuccinate lyase (EC 4.3.2.1) (characterized)
to candidate BPHYT_RS05210 BPHYT_RS05210 argininosuccinate lyase
Query= BRENDA::Q9LAE5 (461 letters) >FitnessBrowser__BFirm:BPHYT_RS05210 Length = 468 Score = 437 bits (1123), Expect = e-127 Identities = 235/461 (50%), Positives = 304/461 (65%), Gaps = 5/461 (1%) Query: 3 KEQTWSQRFESALHPAIARFNASIGFDIELIEYDLTGSQAHAKMLAHTGIISSEEGEQLV 62 K + WS RF + + R+ +S+ FD L D+ GS AHA MLA II++++ + Sbjct: 8 KGEAWSARFSEPMSELVKRYTSSVFFDKRLALVDIEGSLAHASMLAAQKIIAADDLAAIQ 67 Query: 63 AGLEQIRQEHRQGKFHPGVDAEDVHFAVEKRLTEIVGDVGKKLHTARSRNDQVGTDTRLY 122 G+ QI+ E +G+F +D EDVH +E RLT ++GD GK+LHT RSRNDQV TD RL+ Sbjct: 68 RGMAQIKGEIERGEFEWQLDLEDVHLNIEARLTALIGDAGKRLHTGRSRNDQVATDIRLW 127 Query: 123 LRDQIQQIKSELREFQGVLLDIAEKHVETLIPGYTHLQRAQPVSLAHHLLAYFQMAQRDW 182 LR +I +I L E + LLD+AEK+ T++PG+THLQ AQPV+ HHLLAY +M RD Sbjct: 128 LRGEIDRIGGLLTELRTALLDMAEKNASTIMPGFTHLQVAQPVTFGHHLLAYVEMFSRDA 187 Query: 183 ERLGDVSRRVNISPLGCGALAGTTFPIDRHYTAKLLDFDNIYANSLDGVSDRDFAIEFLC 242 ER+ D +RVN PLG ALAGT++PIDRH AK L FD I ANSLD VSDRDFAIEF Sbjct: 188 ERMIDCRKRVNRLPLGAAALAGTSYPIDRHAVAKTLGFDGICANSLDAVSDRDFAIEFTA 247 Query: 243 AASLIMVHLSRLAEEVILWSSEEFRFVILKDSCATGSSIMPQKKNPDVPELVRGKTGRVF 302 A++L+M H+SR +EE++LW S F+ L D TGSSIMPQKKNPDVPEL RGKTGRV Sbjct: 248 ASALVMTHVSRFSEELVLWMSPRVGFIDLADRFCTGSSIMPQKKNPDVPELARGKTGRVN 307 Query: 303 GHLQAMLVIMKGLPLAYNKDLQEDKEGLFDSVNTVKASLEAMTILLREGLEFRTQRLAQA 362 GHL A+L +MKG PLAYNKD QEDKE LFD+V+TV +L ++ G+ + Q + A Sbjct: 308 GHLIALLTLMKGQPLAYNKDNQEDKEPLFDTVDTVADTLRIFAEMV-AGISVKPQAMRDA 366 Query: 363 VTEDFSNATDVADYLAARGVPFREAYNLVGKVVKTSIAAGKLLKDLELEEWQQLHPAFA- 421 + FS ATD+ADYL RG+PFR+A+ V V+ G L DL LEE ++ P A Sbjct: 367 ALQGFSTATDLADYLVKRGLPFRDAHEAVALAVRVCADRGCDLADLTLEEMRKELPNVAH 426 Query: 422 ---ADIYEAISPRQVVAARNSHGGTGFVQVSKALIAARAQI 459 D++ ++ VA+RN GGT QV A+ AARA + Sbjct: 427 LIGEDVFSYLTLEGSVASRNHPGGTAPEQVLAAVKAARAAL 467 Lambda K H 0.320 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 537 Number of extensions: 19 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 461 Length of database: 468 Length adjustment: 33 Effective length of query: 428 Effective length of database: 435 Effective search space: 186180 Effective search space used: 186180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate BPHYT_RS05210 BPHYT_RS05210 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))
../bin/blast/fastacmd -i /tmp/list.29769.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.29769.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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