Align Ornithine carbamoyltransferase (EC 2.1.3.3) (characterized)
to candidate BPHYT_RS15915 BPHYT_RS15915 ornithine carbamoyltransferase
Query= reanno::HerbieS:HSERO_RS07185 (304 letters) >FitnessBrowser__BFirm:BPHYT_RS15915 Length = 309 Score = 453 bits (1166), Expect = e-132 Identities = 213/303 (70%), Positives = 259/303 (85%), Gaps = 1/303 (0%) Query: 3 IKHYLQFSDFTLDEYEYVIERSRVIKRKFKNYEPHHTLADRTLVMVFEKNSTRTRLSFEA 62 I+HYLQF DF+L++YEYV+ER+R++KRKFKNYE +H L DRTL M+FEKNSTRTRLSFEA Sbjct: 6 IRHYLQFKDFSLEDYEYVLERARILKRKFKNYETYHPLHDRTLAMIFEKNSTRTRLSFEA 65 Query: 63 GMHQMGGAAIYLNTRDSQLGRGEPVEDAAQVMSRMCDVIMIRTYGQEIIERFAKHSRVPV 122 G+ Q+GG A++++TRD+QLGRGEP+EDAAQV+SRM D+IMIRT+GQ+I++RF+++SRVPV Sbjct: 66 GIFQLGGHAVFMSTRDTQLGRGEPIEDAAQVISRMVDIIMIRTFGQDILQRFSENSRVPV 125 Query: 123 INGLTNEQHPCQVLADVFTYIEHHGSIQGKIVAWVGDANNMLYSWLQAAEVFGFHVNVST 182 INGLTNE HPCQVLAD+FTY EH G I+ K VAWVGDANNMLY+W++AA++ GF + +ST Sbjct: 126 INGLTNEYHPCQVLADIFTYFEHRGPIRDKTVAWVGDANNMLYTWIEAAQILGFKLRLST 185 Query: 183 PKGYDIDPAQVSPGNKN-YTFFADPADACQDADLVTTDVWTSMGFEAENNARLKAFDGWI 241 P GY +D A V+ + Y F DP +AC ADLVTTDVWTSMGFEAEN AR KAF W Sbjct: 186 PPGYKLDRAMVAAESAPFYEEFDDPNEACTGADLVTTDVWTSMGFEAENEARKKAFADWC 245 Query: 242 VDQAKMARAKKDALFMHCLPAHRGEEVAAEVIDGPQSVVWEEAENRLHVQKALLEYLVHG 301 VD MARA DALFMHCLPAHRGEEV+AEVIDGPQSVVW+EAENRLHVQKAL+EYL+ G Sbjct: 246 VDADMMARANPDALFMHCLPAHRGEEVSAEVIDGPQSVVWDEAENRLHVQKALMEYLLLG 305 Query: 302 RFD 304 + + Sbjct: 306 KLN 308 Lambda K H 0.321 0.135 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 375 Number of extensions: 11 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 304 Length of database: 309 Length adjustment: 27 Effective length of query: 277 Effective length of database: 282 Effective search space: 78114 Effective search space used: 78114 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 48 (23.1 bits)
Align candidate BPHYT_RS15915 BPHYT_RS15915 (ornithine carbamoyltransferase)
to HMM TIGR00658 (argF: ornithine carbamoyltransferase (EC 2.1.3.3))
../bin/blast/fastacmd -i /tmp/list.26410.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.26410.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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