Align Carbamoyl-phosphate synthase small chain, chloroplastic; Carbamoyl-phosphate synthetase glutamine chain; Protein VENOSA 6; EC 6.3.5.5 (characterized)
to candidate BPHYT_RS14195 BPHYT_RS14195 carbamoyl phosphate synthase small subunit
Query= SwissProt::Q9LVW7 (430 letters) >FitnessBrowser__BFirm:BPHYT_RS14195 Length = 384 Score = 338 bits (867), Expect = 2e-97 Identities = 174/376 (46%), Positives = 239/376 (63%), Gaps = 12/376 (3%) Query: 58 ARLVLEDGSIWPAKSFGAPGTRIAELVFNTSLTGYQEILTDPSYAGQFVLMTNPQIGNTG 117 A L L DG+++ S GAPG I E+VFNT++TGYQEILTDPSYA Q V +T P IGN G Sbjct: 8 ALLALADGTVFRGYSIGAPGHTIGEVVFNTAITGYQEILTDPSYARQIVTLTYPHIGNVG 67 Query: 118 VNPDDEESGQCFLTGLVIRNLSISTSNWRCTKTLADYLTERDIMGVYDLDTRAITRRLRE 177 VN +D E+ + GL+IR+L + SN+R +TL YL + ++ + LDTR +TR LR+ Sbjct: 68 VNAEDVEATKVHAAGLIIRDLPVLASNFRMERTLPQYLQDEGVVAIAGLDTRMLTRVLRD 127 Query: 178 DGSLIGVLSTEQSKTDDE--LLQMSRSW-DIVGIDLISDVSCKSPYEWVDKTNAEWDFNT 234 G+ G + + +DDE ++++RS+ + G+DL VS K YEW T EW Sbjct: 128 KGAQNGAI---LAGSDDEAKAIELARSFPGLSGMDLAKVVSTKETYEW---TQTEWRLGE 181 Query: 235 --NSRDGKSYKVIAYDFGIKQNILRRLSSYGCQITVVPSTFPAAEALKMNPDGILFSNGP 292 ++ Y+V+A+D+G+K NILR L+ GC +TV+P+ AA+AL +NPDGI SNGP Sbjct: 182 GYGTQKAPKYRVVAFDYGVKYNILRMLAERGCHVTVLPAQASAADALALNPDGIFLSNGP 241 Query: 293 GDPSAVPYAVETVKELLGK-VPVYGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNNRT 351 GDP YA+ KEL+ + +P +GIC+GHQ++G A+G KT KMK GHHG NHPV++ Sbjct: 242 GDPEPCDYAITATKELIERGIPTFGICLGHQIMGLAVGAKTMKMKTGHHGANHPVKDLDD 301 Query: 352 GQVEISAQNHNYAVDPASLPGGVEVTHVNLNDGSCAGLSFPEMNVMSLQYHPEASPGPHD 411 G+V I++QNH +AVD +LP THV+L DG+ G + + Q HPEASPGPHD Sbjct: 302 GRVVITSQNHGFAVDADTLPANARATHVSLFDGTLQGFALTDKPAFCFQGHPEASPGPHD 361 Query: 412 SDNAFREFIELMKRSK 427 F F LM K Sbjct: 362 IAYLFDRFTALMDTKK 377 Lambda K H 0.316 0.134 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 469 Number of extensions: 16 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 430 Length of database: 384 Length adjustment: 31 Effective length of query: 399 Effective length of database: 353 Effective search space: 140847 Effective search space used: 140847 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate BPHYT_RS14195 BPHYT_RS14195 (carbamoyl phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.23514.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23514.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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