Align 3-phosphoshikimate 1-carboxyvinyltransferase; 5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EPSPS; EC 2.5.1.19 (characterized)
to candidate BPHYT_RS14895 BPHYT_RS14895 3-phosphoshikimate 1-carboxyvinyltransferase
Query= SwissProt::Q9KRB0 (426 letters) >FitnessBrowser__BFirm:BPHYT_RS14895 Length = 434 Score = 503 bits (1294), Expect = e-147 Identities = 265/436 (60%), Positives = 324/436 (74%), Gaps = 13/436 (2%) Query: 1 MESLTLQPIELISGEVNLPGSKSVSNRALLLAALASGTTRLTNLLDSDDIRHMLNALTKL 60 ME L L P SG + LPGSKS+SNR LLLAALA G T +TNLLDSDD R ML+AL KL Sbjct: 1 MEFLDLGPFSRASGTIRLPGSKSISNRVLLLAALAEGETTITNLLDSDDTRVMLDALEKL 60 Query: 61 GVNYRLSADKTTCEVEGLGQAFHTTQPLELFLGNAGTAMRPLAAALCLGQGDYVLTGEPR 120 GV RL D TC V G AF T + +LFLGNAGTA+RPL AAL + GDY + G PR Sbjct: 61 GV--RLKRDGDTCVVTGTRGAF-TARTADLFLGNAGTAVRPLTAALAVNGGDYRIHGVPR 117 Query: 121 MKERPIGHLVDALRQAGAQIEYLEQENFPPLRIQGTGLQAGT-VTIDGSISSQFLTAFLM 179 M ERPIG LVD LRQ GA+I+Y E E +PPLRI+ + A +T+ G +SSQFLT+ LM Sbjct: 118 MHERPIGDLVDGLRQLGARIDYEENEGYPPLRIRPGQINADAPITVRGDVSSQFLTSLLM 177 Query: 180 SAPLAQ---GKVTIKIVGELVSKPYIDITLHIMEQFGVQVINHDYQEFVIPAGQSYVSPG 236 + PL + G T+++ GEL+SKPYI+IT+ +ME+FG++V H + +FV+PAGQ Y SPG Sbjct: 178 TLPLLRTESGVSTVQVDGELISKPYIEITIKLMERFGIKVERHGWHQFVVPAGQRYQSPG 237 Query: 237 QFLVEGDASSASYFLAAAAIKGGEVKVTGIGKNSIQGDIQFADALEKMGAQIEWGDDYVI 296 +VEGDASSASYFLAA A+ GG ++V G+G+ SIQGD+ FADAL KMGA ++ GDD++ Sbjct: 238 TIMVEGDASSASYFLAAGALGGGPLRVEGVGRASIQGDVGFADALIKMGANLQMGDDWIE 297 Query: 297 AR-----RGELNAVDLDFNHIPDAAMTIATTALFAKGTTAIRNVYNWRVKETDRLAAMAT 351 R G+L +D+D N IPDAAMTIA ALFA G T +RN+ +WRVKETDRLAAMAT Sbjct: 298 VRGVGHDSGKLEPIDMDCNLIPDAAMTIAVAALFADGATTLRNIASWRVKETDRLAAMAT 357 Query: 352 ELRKVGATVEEGEDFIVITPPTKLI-HAAIDTYDDHRMAMCFSLVALSDTPVTINDPKCT 410 ELRKVGA V+EGED++VI PP KL +AAIDTYDDHRMAMCFSLV+L PV INDPKC Sbjct: 358 ELRKVGAKVQEGEDYLVIEPPEKLTPNAAIDTYDDHRMAMCFSLVSLGGVPVRINDPKCV 417 Query: 411 SKTFPDYFDKFAQLSR 426 KTFPDYF++F L++ Sbjct: 418 GKTFPDYFERFTALAQ 433 Lambda K H 0.318 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 535 Number of extensions: 23 Number of successful extensions: 8 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 426 Length of database: 434 Length adjustment: 32 Effective length of query: 394 Effective length of database: 402 Effective search space: 158388 Effective search space used: 158388 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate BPHYT_RS14895 BPHYT_RS14895 (3-phosphoshikimate 1-carboxyvinyltransferase)
to HMM TIGR01356 (aroA: 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19))
../bin/blast/fastacmd -i /tmp/list.21699.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21699.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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