Align 3-dehydroquinate dehydratase (EC 4.2.1.10) (characterized)
to candidate BPHYT_RS22680 BPHYT_RS22680 3-dehydroquinate dehydratase
Query= BRENDA::W6JLW3 (160 letters) >FitnessBrowser__BFirm:BPHYT_RS22680 Length = 151 Score = 177 bits (449), Expect = 7e-50 Identities = 82/142 (57%), Positives = 108/142 (76%) Query: 17 ITVLNGPNLNMLGLRQPGIYGHATLDDVEQVCIQAAERLDVAIDFRQTNGEGELVSWVQE 76 + VLNGPNLN+LG R+P IYG TLDDV ++C AAERLD++I+F Q+N E +L+ W+ Sbjct: 6 VLVLNGPNLNLLGTREPAIYGSETLDDVAKLCRDAAERLDLSINFCQSNAEHQLIDWLHA 65 Query: 77 CRGRADGIVINPAAYGHTSIALLDALLAVELPVVEVHISNIHRREPFRHHTYVSQAAIGV 136 R + DGIVINPAAY HTS+A+ DAL A+E PVVEVHISN+HRRE FRHH+YVS A + Sbjct: 66 ARTKVDGIVINPAAYTHTSVAIADALTAIEKPVVEVHISNVHRREAFRHHSYVSAVADAI 125 Query: 137 ICGLGVRGYAHALQAITDMIED 158 I G G +GY AL+ + ++++ Sbjct: 126 IIGCGTQGYVLALERMATILKN 147 Lambda K H 0.322 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 95 Number of extensions: 2 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 160 Length of database: 151 Length adjustment: 17 Effective length of query: 143 Effective length of database: 134 Effective search space: 19162 Effective search space used: 19162 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 43 (21.2 bits)
Align candidate BPHYT_RS22680 BPHYT_RS22680 (3-dehydroquinate dehydratase)
to HMM TIGR01088 (aroQ: 3-dehydroquinate dehydratase, type II (EC 4.2.1.10))
../bin/blast/fastacmd -i /tmp/list.11555.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11555.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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