Align Fructose-bisphosphate aldolase; FBP aldolase; FBPA; Fructose-1,6-bisphosphate aldolase; EC 4.1.2.13 (characterized)
to candidate BPHYT_RS16260 BPHYT_RS16260 fructose-bisphosphate aldolase
Query= SwissProt::Q56815 (354 letters) >FitnessBrowser__BFirm:BPHYT_RS16260 Length = 354 Score = 513 bits (1321), Expect = e-150 Identities = 253/353 (71%), Positives = 298/353 (84%) Query: 1 MALVSMRQLLDHAADDSYGLPAFNVNNMEQVKAIMDAARATSSPVILQGSAGARKYAGEP 60 M LVSMRQLLDHAA++ YGLPAFNVNN+EQV+AIM AA ++PVI+Q SAGARKYAGE Sbjct: 1 MPLVSMRQLLDHAAENGYGLPAFNVNNLEQVQAIMAAADKVNAPVIMQASAGARKYAGEA 60 Query: 61 FLRHLIAAAVEAYPEIPVVMHQDHGASPAVCMGAIKSGFSSVMMDGSLKEDGKTPADYDY 120 FLRHLI AAVE+YP IPVVMHQDHG SPAVCM AI+SGF+SVMMDGSL+ DGKT A Y+Y Sbjct: 61 FLRHLIEAAVESYPHIPVVMHQDHGQSPAVCMAAIRSGFTSVMMDGSLEADGKTVASYEY 120 Query: 121 NVSVTAKVVELAHAVGVSVEGELGCLGSLETGKGEAEDGHGAEEALDHSKLLTDPDEAAQ 180 NV V+ KVVE AH++G++VE ELG LGSLET KG+ EDGHGAE + +LLTDP++AA Sbjct: 121 NVDVSRKVVEAAHSIGITVEAELGVLGSLETMKGDKEDGHGAEGTMTREQLLTDPEQAAD 180 Query: 181 FVKATQCDALAIAIGTSHGAYKFTRKPTGDILAIDRIKAIHQRIPTTHLVMHGSSSVPQE 240 FVK TQCDALAIAIGTSHGAYKF++KPTGDIL+I RIK IHQRIP THLVMHGSSSVPQE Sbjct: 181 FVKLTQCDALAIAIGTSHGAYKFSKKPTGDILSIQRIKEIHQRIPNTHLVMHGSSSVPQE 240 Query: 241 LLEEIRTYGGDIKETYGVPVEEIQEGIRYGVRKVNIDTDIRLAMTAAIRRVGAKNKSEFD 300 LL EIR +GGD+KETYGVPVEEIQEGI+ GVRKVNIDTD+RLA+T AIRR A N S+FD Sbjct: 241 LLAEIREFGGDMKETYGVPVEEIQEGIKNGVRKVNIDTDLRLAITGAIRRYMATNPSKFD 300 Query: 301 PRKFMAAAMEEAKKVCIARFEAFGSAGKAEKIRAIELDEMAKRYASGELAQVV 353 PR ++ A E A K+C+ R+ FG G+A KI+ + LD++A++Y +GEL+QVV Sbjct: 301 PRDYLKPAREAAMKICVERYTQFGCEGQAGKIKPVSLDKIAEKYKAGELSQVV 353 Lambda K H 0.316 0.132 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 430 Number of extensions: 10 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 354 Length of database: 354 Length adjustment: 29 Effective length of query: 325 Effective length of database: 325 Effective search space: 105625 Effective search space used: 105625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate BPHYT_RS16260 BPHYT_RS16260 (fructose-bisphosphate aldolase)
to HMM TIGR01521 (fba: fructose-bisphosphate aldolase, class II, Calvin cycle subtype (EC 4.1.2.13))
../bin/blast/fastacmd -i /tmp/list.14117.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14117.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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