GapMind for Amino acid biosynthesis

 

Alignments for a candidate for cysE in Burkholderia phytofirmans PsJN

Align serine O-acetyltransferase (EC 2.3.1.30) (characterized)
to candidate BPHYT_RS12455 BPHYT_RS12455 serine O-acetyltransferase

Query= BRENDA::P95231
         (229 letters)



>FitnessBrowser__BFirm:BPHYT_RS12455
          Length = 278

 Score =  199 bits (507), Expect = 3e-56
 Identities = 98/169 (57%), Positives = 121/169 (71%), Gaps = 1/169 (0%)

Query: 1   MLTAMRGDIRAARERDPAAPTALEVIFCYPGVHAVWGHRLAHWLWQRGARLLARAAAEFT 60
           M T +R DI   RERDPAA +A EV+ CYPG+HA+  HRLAH  W+   R  AR  ++  
Sbjct: 1   MFTRLREDIATIRERDPAARSAWEVLTCYPGLHALVLHRLAHACWRAKRRWFARFVSQMA 60

Query: 61  RILTGVDIHPGAVIGARVFIDHATGVVIGETAEVGDDVTIYHGVTLGGSGMV-GGKRHPT 119
           R +TG++IHPGA +G RVFIDH  GVVIGETA++GDD TIY GVTLGG+ +  G KRHPT
Sbjct: 61  RFMTGIEIHPGATLGRRVFIDHGMGVVIGETAQIGDDCTIYQGVTLGGTSLTRGAKRHPT 120

Query: 120 VGDRVIIGAGAKVLGPIKIGEDSRIGANAVVVKPVPPSAVVVGVPGQVI 168
           +   VI+GAGAKVLG   IG D++IG+NAVV KPVP     VG P ++I
Sbjct: 121 LERGVIVGAGAKVLGGFTIGADAKIGSNAVVTKPVPARGTAVGNPARII 169


Lambda     K      H
   0.321    0.141    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 209
Number of extensions: 11
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 278
Length adjustment: 24
Effective length of query: 205
Effective length of database: 254
Effective search space:    52070
Effective search space used:    52070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)

Align candidate BPHYT_RS12455 BPHYT_RS12455 (serine O-acetyltransferase)
to HMM TIGR01172 (cysE: serine O-acetyltransferase (EC 2.3.1.30))

Software error:

../bin/blast/fastacmd -i /tmp/list.8613.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8613.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.