Align serine O-acetyltransferase (EC 2.3.1.30) (characterized)
to candidate BPHYT_RS12455 BPHYT_RS12455 serine O-acetyltransferase
Query= BRENDA::P95231 (229 letters) >FitnessBrowser__BFirm:BPHYT_RS12455 Length = 278 Score = 199 bits (507), Expect = 3e-56 Identities = 98/169 (57%), Positives = 121/169 (71%), Gaps = 1/169 (0%) Query: 1 MLTAMRGDIRAARERDPAAPTALEVIFCYPGVHAVWGHRLAHWLWQRGARLLARAAAEFT 60 M T +R DI RERDPAA +A EV+ CYPG+HA+ HRLAH W+ R AR ++ Sbjct: 1 MFTRLREDIATIRERDPAARSAWEVLTCYPGLHALVLHRLAHACWRAKRRWFARFVSQMA 60 Query: 61 RILTGVDIHPGAVIGARVFIDHATGVVIGETAEVGDDVTIYHGVTLGGSGMV-GGKRHPT 119 R +TG++IHPGA +G RVFIDH GVVIGETA++GDD TIY GVTLGG+ + G KRHPT Sbjct: 61 RFMTGIEIHPGATLGRRVFIDHGMGVVIGETAQIGDDCTIYQGVTLGGTSLTRGAKRHPT 120 Query: 120 VGDRVIIGAGAKVLGPIKIGEDSRIGANAVVVKPVPPSAVVVGVPGQVI 168 + VI+GAGAKVLG IG D++IG+NAVV KPVP VG P ++I Sbjct: 121 LERGVIVGAGAKVLGGFTIGADAKIGSNAVVTKPVPARGTAVGNPARII 169 Lambda K H 0.321 0.141 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 209 Number of extensions: 11 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 229 Length of database: 278 Length adjustment: 24 Effective length of query: 205 Effective length of database: 254 Effective search space: 52070 Effective search space used: 52070 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 46 (22.3 bits)
Align candidate BPHYT_RS12455 BPHYT_RS12455 (serine O-acetyltransferase)
to HMM TIGR01172 (cysE: serine O-acetyltransferase (EC 2.3.1.30))
../bin/blast/fastacmd -i /tmp/list.8613.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8613.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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