Align 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; EC 5.3.1.16; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (uncharacterized)
to candidate BPHYT_RS17685 BPHYT_RS17685 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Query= curated2:A1TKZ3 (248 letters) >FitnessBrowser__BFirm:BPHYT_RS17685 Length = 250 Score = 409 bits (1052), Expect = e-119 Identities = 199/244 (81%), Positives = 221/244 (90%) Query: 1 MLLIPAIDLKDGHCVRLKQGDMDQSTTFGEDPAAMARKWVDAGARRLHLVDLNGAFAGAP 60 MLLIPAIDLKDG CVRLKQGDMDQ+T F E+PAAMAR WVD GARRLHLVDLNGAFAG P Sbjct: 1 MLLIPAIDLKDGQCVRLKQGDMDQATIFSEEPAAMARHWVDRGARRLHLVDLNGAFAGKP 60 Query: 61 KNHAAIKAILKEVGDDLPVQLGGGIRDLDTIEKYIDGGLRYVIIGTAAVKNPGFLKDACS 120 KN AI+AI++EVG ++PVQLGGGIRDL+TIE+Y+D GL YVIIGTAAVKNPGFL+DAC+ Sbjct: 61 KNEDAIRAIIEEVGGEIPVQLGGGIRDLNTIERYLDDGLSYVIIGTAAVKNPGFLQDACT 120 Query: 121 AFGGHIIVGLDAKDGKVATDGWSKLTGHEVVDLAKRFEDWGVESIVYTDIGRDGMLSGIN 180 AFGGHIIVGLDAKDGKVATDGWSKLTGHEV DLA++FED+G ESI+YTDIGRDGML GIN Sbjct: 121 AFGGHIIVGLDAKDGKVATDGWSKLTGHEVADLARKFEDYGCESIIYTDIGRDGMLQGIN 180 Query: 181 IEATVKLAQALTIPVIASGGLAGMADIEQLCAVESEGVEGVICGRAIYSGDLDFAAAQAR 240 IEATV+LA+A+ IPVIASGGL+ + DIE LC VE EG+EGVICGRAIYSGDLDFAAAQ Sbjct: 181 IEATVRLARAVKIPVIASGGLSNLTDIESLCEVEDEGIEGVICGRAIYSGDLDFAAAQTL 240 Query: 241 ADEL 244 AD L Sbjct: 241 ADRL 244 Lambda K H 0.319 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 334 Number of extensions: 7 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 248 Length of database: 250 Length adjustment: 24 Effective length of query: 224 Effective length of database: 226 Effective search space: 50624 Effective search space used: 50624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 46 (22.3 bits)
Align candidate BPHYT_RS17685 BPHYT_RS17685 (1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase)
to HMM TIGR00007 (hisA: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16))
../bin/blast/fastacmd -i /tmp/list.22357.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.22357.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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