Align L-threonine dehydratase biosynthetic IlvA; Threonine deaminase; EC 4.3.1.19 (characterized)
to candidate BPHYT_RS11065 BPHYT_RS11065 threonine dehydratase
Query= SwissProt::P04968 (514 letters) >FitnessBrowser__BFirm:BPHYT_RS11065 Length = 516 Score = 525 bits (1352), Expect = e-153 Identities = 268/504 (53%), Positives = 359/504 (71%), Gaps = 6/504 (1%) Query: 15 EYLRAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLT 74 +YL+ L A VY+ A+ T L++ LS+RL N + +KRED QPV SFK+RGAY MA ++ Sbjct: 13 DYLKKTLTARVYDVARETELERAPNLSARLRNPVYLKREDNQPVFSFKVRGAYNKMAHIS 72 Query: 75 EEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGG---EVLLH 131 E GVITASAGNHAQGVA S+AR+GVKA+IV+P T +KVDAVR GG EV+ Sbjct: 73 AEALERGVITASAGNHAQGVALSAARMGVKAIIVVPVTTPQVKVDAVRAHGGPTVEVVQF 132 Query: 132 GANFDEAKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQ-DAHLDRVFVPVGGG 190 G ++ +A A++L +++ T+V PFD P VIAGQGT+A+E+L Q + +FVP+GGG Sbjct: 133 GESYSDAYEHAVKLQKERDLTFVHPFDDPYVIAGQGTVAMEILSQHQGPIHAIFVPIGGG 192 Query: 191 GLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDE 250 GLAAGVA +K + P+IKVI V+ +DS + A+L AG V L VGLF++G AVK +G+E Sbjct: 193 GLAAGVAAYVKSVRPEIKVIGVQTDDSCAMAASLKAGERVTLNEVGLFSDGTAVKLVGEE 252 Query: 251 TFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERL 310 TFRLC EYLDD++ V++DA+CAA+KD+F+D R+V EP+G+LA+AG K+Y I + L Sbjct: 253 TFRLCSEYLDDVLLVNTDALCAAIKDVFQDTRSVLEPAGSLAVAGAKQYAEREGIENQTL 312 Query: 311 AHILSGANVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYR 370 I SGAN+NF +R+V+ER E+GE REA+ AVTIPEE+GSF +FC+L+G RSVTEFNYR Sbjct: 313 IAITSGANMNFDRMRFVAERAEVGEAREAVFAVTIPEERGSFRRFCELVGTRSVTEFNYR 372 Query: 371 FADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHP 430 ADA +A IFVGV++ R E +I G++ VDL+ DE++K H+RYMVGGR Sbjct: 373 IADANSAHIFVGVQI-RNRSESAQIAGAFEAHGFATVDLTFDELSKQHIRYMVGGRSPLA 431 Query: 431 LQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGDHEPD-FE 489 ERL+ FEFPE PGAL++FL+++ WNISLFHYR+ G DY +L ++ D E + F Sbjct: 432 HDERLFRFEFPERPGALMKFLSSMAPNWNISLFHYRNQGADYSSILVGIQVPDSENEAFN 491 Query: 490 TRLNELGYDCHDETNNPAFRFFLA 513 L LGY +ET NP +R FLA Sbjct: 492 KFLATLGYPNWEETQNPVYRLFLA 515 Lambda K H 0.321 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 655 Number of extensions: 27 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 514 Length of database: 516 Length adjustment: 35 Effective length of query: 479 Effective length of database: 481 Effective search space: 230399 Effective search space used: 230399 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.6 bits)
Align candidate BPHYT_RS11065 BPHYT_RS11065 (threonine dehydratase)
to HMM TIGR01124 (ilvA: threonine ammonia-lyase, biosynthetic (EC 4.3.1.19))
../bin/blast/fastacmd -i /tmp/list.4133.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4133.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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