Align 3-isopropylmalate dehydratase small subunit 1; Alpha-IPM isomerase 1; IPMI 1; Isopropylmalate isomerase 1; EC 4.2.1.33 (characterized)
to candidate BPHYT_RS33905 BPHYT_RS33905 3-isopropylmalate dehydratase small subunit
Query= SwissProt::P04787 (201 letters) >FitnessBrowser__BFirm:BPHYT_RS33905 Length = 217 Score = 242 bits (617), Expect = 4e-69 Identities = 122/205 (59%), Positives = 148/205 (72%), Gaps = 9/205 (4%) Query: 3 EKFTQHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLFNDWRFLD--EKGQQP--- 57 EKF HTG+V PLD NVDTDAIIPKQFL+ + RTGFG + F++WR+LD E GQ Sbjct: 2 EKFIVHTGVVAPLDRENVDTDAIIPKQFLKSIKRTGFGPNAFDEWRYLDHGEPGQDNSKR 61 Query: 58 --NPEFVLNFPEYQGASILLARENFGCGSSREHAPWALTDYGFKVVIAPSFADIFYGNSF 115 NP+FVLN P YQGAS+LLAR+NFGCGSSREHAPWAL YGF+ +IAPSFADIFY N F Sbjct: 62 PLNPDFVLNQPRYQGASVLLARKNFGCGSSREHAPWALEQYGFRALIAPSFADIFYNNCF 121 Query: 116 NNQLLPVTLSDAQVDELFALVKANPGIKFEVDLEAQVVKAGD--KTYSFKIDDFRRHCML 173 N +LP+ L++ QVD LF A G K VDLEAQVV+ D Y F++ FR++C+L Sbjct: 122 KNGVLPIVLTEQQVDHLFDETYAFNGFKLTVDLEAQVVRTSDGGTEYPFEVAAFRKYCLL 181 Query: 174 NGLDSIGLTLQHEDAIAAYENKQPA 198 NG D IGLTL+H D I +E ++ A Sbjct: 182 NGFDDIGLTLRHADKIRQFEAERIA 206 Lambda K H 0.321 0.138 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 211 Number of extensions: 8 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 201 Length of database: 217 Length adjustment: 21 Effective length of query: 180 Effective length of database: 196 Effective search space: 35280 Effective search space used: 35280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 45 (21.9 bits)
Align candidate BPHYT_RS33905 BPHYT_RS33905 (3-isopropylmalate dehydratase small subunit)
to HMM TIGR00171 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))
../bin/blast/fastacmd -i /tmp/list.18267.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18267.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.