GapMind for Amino acid biosynthesis

 

Alignments for a candidate for ilvI in Burkholderia phytofirmans PsJN

Align acetolactate synthase (subunit 1/2) (EC 2.2.1.6) (characterized)
to candidate BPHYT_RS06550 BPHYT_RS06550 acetolactate synthase

Query= BRENDA::P00894
         (163 letters)



>FitnessBrowser__BFirm:BPHYT_RS06550
          Length = 163

 Score =  191 bits (486), Expect = 4e-54
 Identities = 93/163 (57%), Positives = 131/163 (80%), Gaps = 1/163 (0%)

Query: 1   MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQI 60
           MR I+SVLLENE GALSRV+GLFS RGYNIE+LTVAPT+D +LSRMTI ++G + V+EQI
Sbjct: 1   MRHIISVLLENEPGALSRVVGLFSARGYNIETLTVAPTEDRSLSRMTIVSIGSDDVIEQI 60

Query: 61  EKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLY 120
            K L++L++V++V +L +GAH+ERE+ML+K++A G  R+E+KR ++IFRG+IIDVT   Y
Sbjct: 61  TKHLNRLIEVVKVVDLTEGAHIERELMLIKVRAVGKEREEMKRMSDIFRGRIIDVTEKTY 120

Query: 121 TVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGDKIMR 163
           T++L G S KLDAF+  + D   I+E  R+G  G+ RG++I++
Sbjct: 121 TIELTGASDKLDAFIEGL-DATAILETVRTGGSGIGRGERILK 162


Lambda     K      H
   0.318    0.136    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 114
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 163
Length adjustment: 18
Effective length of query: 145
Effective length of database: 145
Effective search space:    21025
Effective search space used:    21025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 43 (21.2 bits)

Align candidate BPHYT_RS06550 BPHYT_RS06550 (acetolactate synthase)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.24593.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.24593.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.