Align succinyldiaminopimelate transaminase (EC 2.6.1.17) (characterized)
to candidate BPHYT_RS12185 BPHYT_RS12185 succinyldiaminopimelate aminotransferase
Query= BRENDA::Q9ZEX3 (397 letters) >FitnessBrowser__BFirm:BPHYT_RS12185 Length = 405 Score = 474 bits (1220), Expect = e-138 Identities = 242/403 (60%), Positives = 296/403 (73%), Gaps = 11/403 (2%) Query: 1 MNPRLDALHPYPFEKLRALLADAGKPTHDLPPINLSIGEPKHAAPACVGQAIAANLAGLS 60 MNP LD+L PYPFEKLRAL AD P+ L I+ IGEPKH P + A+ A+L GLS Sbjct: 1 MNPLLDSLQPYPFEKLRALFADV-TPSAGLAHISFGIGEPKHPTPELIRDAVVASLGGLS 59 Query: 61 VYPSTKGEPALRQAISQWLSRRYSIPAPDPESEVLPVLGSREALFAFAQTVIDPSAGA-- 118 YP+T G PALR++I++W++RRY++P DP ++VLPV GSREALFA AQTV+DP A Sbjct: 60 SYPATIGSPALRESIAKWVTRRYNLPPVDPATQVLPVSGSREALFALAQTVLDPKKNADG 119 Query: 119 ---LVVCPNPFYQIYEGAALLAGATPYYVNADPARDFGLRTGRVPDEVWRRTQLVFVCSP 175 +V+CPNPFYQIYEGAA+LAGA PY+VN+DPAR+F VP ++W RTQL++VCSP Sbjct: 120 EPAIVLCPNPFYQIYEGAAILAGAQPYFVNSDPARNFACDYSAVPADIWARTQLLYVCSP 179 Query: 176 GNPAGNVMSLEEWRTLFELSDRHGFVIAAYECYSEIYLDEDTPPLGSLQAARRLGRDRYT 235 GNP G V++L++WR LF LSDR+GFVIA+ ECYSEIY DE PPLG L+AA +LGR + Sbjct: 180 GNPTGAVLTLDDWRELFALSDRYGFVIASDECYSEIYFDEANPPLGGLEAAHKLGRG-FE 238 Query: 236 NLVAFSSLSKRSNVPGMRSGFVAGDAALLARFLLYRTYHGSAMSPVVSAASIAAWSMRRM 295 LV SSLSKRSNVPGMRSGFVAGDAA+L FLLYRTYHG+A+S V +ASI AW+ Sbjct: 239 RLVMLSSLSKRSNVPGMRSGFVAGDAAILKDFLLYRTYHGAALSTVFQSASIVAWNDETH 298 Query: 296 CRKT-AQYRAKFEAVLPILQNVLDVRAPQASFYLWAG---TPGSDTAFARELYGRTGVTV 351 R+ A+Y KF V P+L VLDVR P A+FYLWA T +DT FA+ LY VTV Sbjct: 299 VRENRAKYVQKFSTVTPMLAEVLDVRLPDAAFYLWADVSRTGLTDTEFAQRLYADYNVTV 358 Query: 352 LPGSLLAREAHNANPGQGRIRIALVAPLDQCVQAAERIAHFAR 394 LPGS LAR AH NPG+ +R+ALVA +D+C Q A+RI F R Sbjct: 359 LPGSFLARTAHGVNPGRNFVRMALVAGVDECTQGAQRIVDFCR 401 Lambda K H 0.321 0.135 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 564 Number of extensions: 21 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 397 Length of database: 405 Length adjustment: 31 Effective length of query: 366 Effective length of database: 374 Effective search space: 136884 Effective search space used: 136884 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.9 bits)
Align candidate BPHYT_RS12185 BPHYT_RS12185 (succinyldiaminopimelate aminotransferase)
to HMM TIGR03538 (dapC: succinyldiaminopimelate transaminase (EC 2.6.1.17))
../bin/blast/fastacmd -i /tmp/list.20454.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20454.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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