Align Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 (characterized)
to candidate BPHYT_RS01665 BPHYT_RS01665 diaminopimelate epimerase
Query= SwissProt::P0A6K1 (274 letters) >FitnessBrowser__BFirm:BPHYT_RS01665 Length = 299 Score = 282 bits (721), Expect = 7e-81 Identities = 149/283 (52%), Positives = 182/283 (64%), Gaps = 9/283 (3%) Query: 1 MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHY 60 ++F+KMHG GNDF+V+D TQ V +P +R LADRH GVG DQLL+VE P +DF Y Sbjct: 3 LKFTKMHGAGNDFVVLDGYTQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRY 62 Query: 61 RIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANGRMVLTVTDDDLVRVNMGE 120 RIFN DG EV CGNGARCF +FVR GLT++R +RV G + LT+ ++ V V+MG Sbjct: 63 RIFNCDGGEVEHCGNGARCFVKFVRDSGLTDQRSVRVQVQKGTITLTMQENGEVLVDMGT 122 Query: 121 PNFEPSAVPF-------RANKAEKTYIMRAAEQTILCGVVSMGNPHCVIQVDDVDTAAVE 173 P F+P VPF R A+ + + T VVSMGNPH V VDDV+ V Sbjct: 123 PVFDPERVPFATKGLQGRGEGADTLWPLDVNGTTRWISVVSMGNPHAVQVVDDVEAFPVL 182 Query: 174 TLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACGSGACAAVAVGIQQGL 233 GPV+E H RFP+R N GFMQ+V R I+LRVYERGAGET ACG+GACAAVA GI++GL Sbjct: 183 VEGPVIERHARFPQRVNAGFMQIVGRSEIKLRVYERGAGETLACGTGACAAVAAGIRRGL 242 Query: 234 LAEEVRVELPGGRLDIAWKG--PGHPLYMTGPAVHVYDGFIHL 274 L V V GG+L I W PL M GPA V++G I L Sbjct: 243 LDAPVLVHTHGGKLTITWDAAQADQPLLMAGPAATVFEGEIEL 285 Lambda K H 0.323 0.140 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 254 Number of extensions: 6 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 274 Length of database: 299 Length adjustment: 26 Effective length of query: 248 Effective length of database: 273 Effective search space: 67704 Effective search space used: 67704 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 47 (22.7 bits)
Align candidate BPHYT_RS01665 BPHYT_RS01665 (diaminopimelate epimerase)
to HMM TIGR00652 (dapF: diaminopimelate epimerase (EC 5.1.1.7))
../bin/blast/fastacmd -i /tmp/list.23761.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23761.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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