Align Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 (characterized)
to candidate BPHYT_RS35090 BPHYT_RS35090 diaminopimelate decarboxylase
Query= SwissProt::E0IWI3 (420 letters) >FitnessBrowser__BFirm:BPHYT_RS35090 Length = 413 Score = 532 bits (1371), Expect = e-156 Identities = 254/405 (62%), Positives = 323/405 (79%), Gaps = 2/405 (0%) Query: 15 ENLLRLPAEFGCPVWVYDAQIIRRQIAALKQFDVVRFAQKACSNIHILRLMREQGVKVDS 74 + L+ L E G P+WVYDA IRR+IA L+ FDV+R+AQKACSN+HIL+LMR++G VD+ Sbjct: 6 QQLVELAHEHGTPLWVYDADTIRRRIAELRSFDVIRYAQKACSNLHILKLMRDEGAMVDA 65 Query: 75 VSLGEIERALAAGYNPQTHPDDIVFTADVIDQATLERVSELQIPVNAGSVDMLDQLGQVS 134 VSLGEI+R+LAAG+ P P+ +VFTAD+ID ATL V E +I VNAGS+DML+Q+G+ + Sbjct: 66 VSLGEIKRSLAAGFKPDGDPEGVVFTADLIDHATLATVIEHRITVNAGSLDMLEQIGRHA 125 Query: 135 P-GHRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHLQLVGIHMHIG 193 P GHRVWLR+NPGFGHGHS KTNTGGE+SKHGIW D+P A+++++R+ L+LVG+HMHIG Sbjct: 126 PEGHRVWLRINPGFGHGHSNKTNTGGEHSKHGIWLDDVPRAVELVRRYRLKLVGLHMHIG 185 Query: 194 SGVDYAHLEQVCGAMVRQVIEFGQDLQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAARE 253 SGVDY HL +VC AMV V G D++AISAGGGLSVPY++GE +D HY+ LW+AAR Sbjct: 186 SGVDYGHLSRVCEAMVEAVKGLGHDIEAISAGGGLSVPYREGEPDIDVAHYFRLWDAARR 245 Query: 254 QIARHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGS 313 QI H+GH V+LEIEPGRFLVAQSGVL+ +V ++ + ++ F L+DAGFNDL+RP+ YGS Sbjct: 246 QIETHVGHRVRLEIEPGRFLVAQSGVLVAEVHALNRRPAQQFALLDAGFNDLVRPSFYGS 305 Query: 314 YHHISALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLH 373 +H ++ L DG +L AP VAGPLCE+GDVFTQ E G + R++ + GD++V H Sbjct: 306 HHEMTVLRRDG-ALSEAPIDSFAVAGPLCEAGDVFTQAESGVITNRSIHTPEVGDFIVFH 364 Query: 374 DTGAYGASMSSNYNSRPLLPEVLFDNGQARLIRRRQTIEELLALE 418 D GAYGASMSSNYNSRPL PEVL D+G+ RLIRRRQTI+ELLALE Sbjct: 365 DAGAYGASMSSNYNSRPLAPEVLLDHGKPRLIRRRQTIDELLALE 409 Lambda K H 0.320 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 621 Number of extensions: 33 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 420 Length of database: 413 Length adjustment: 31 Effective length of query: 389 Effective length of database: 382 Effective search space: 148598 Effective search space used: 148598 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate BPHYT_RS35090 BPHYT_RS35090 (diaminopimelate decarboxylase)
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))
../bin/blast/fastacmd -i /tmp/list.8726.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8726.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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