Align methionine synthase (EC 2.1.1.13) (characterized)
to candidate BPHYT_RS02305 BPHYT_RS02305 methionine synthase
Query= BRENDA::P13009 (1227 letters) >FitnessBrowser__BFirm:BPHYT_RS02305 Length = 902 Score = 1060 bits (2741), Expect = 0.0 Identities = 559/904 (61%), Positives = 664/904 (73%), Gaps = 27/904 (2%) Query: 341 RLSGLEPLNIGEDSLFVNVGERTNVTGSAKFKRLIKEEKYSEALDVARQQVENGAQIIDI 400 RLSGLEP N+ +LF+NVGERTNVTGS F R+I +++ EA+ VARQQVENGAQ+ID+ Sbjct: 4 RLSGLEPFNVTSGTLFINVGERTNVTGSKAFARMILNDQFDEAVAVARQQVENGAQVIDV 63 Query: 401 NMDEGMLDAEAAMVRFLNLIAGEPDIARVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMK 460 NMDE MLD++AAMVRF+NLIA EPDIARVPIMIDSSKW+VIE GLKC+QGK IVNSIS+K Sbjct: 64 NMDEAMLDSKAAMVRFMNLIASEPDIARVPIMIDSSKWEVIEAGLKCVQGKAIVNSISLK 123 Query: 461 EGVDAFIHHAKLLRRYGAAVVVMAFDEQGQADTRARKIEICRRAYKILTEEVGFPPEDII 520 EG +AF HHA L+RRYGAA VVMAFDEQGQADT RK +IC+R+Y L EVGFPPEDII Sbjct: 124 EGEEAFRHHANLIRRYGAAAVVMAFDEQGQADTFERKTQICKRSYDFLVNEVGFPPEDII 183 Query: 521 FDPNIFAVATGIEEHNNYAQDFIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIH 580 FDPNIFA+ATGIEEHNNYA DFI A IK LP+A +SGGVSNVSFSFRGNDPVREAIH Sbjct: 184 FDPNIFAIATGIEEHNNYAVDFINATRWIKENLPYAKVSGGVSNVSFSFRGNDPVREAIH 243 Query: 581 AVFLYYAIRNGMDMGIVNAGQLAIYDDLPAELRDAVEDVILNRRDDGTERLLELAEKYRG 640 VFLY+AI+ GMDMGIVNAGQL +Y DL ELR+ VEDV+LNRR+DGT+RLLE+A+K+ Sbjct: 244 TVFLYHAIQAGMDMGIVNAGQLGVYADLDPELRERVEDVVLNRREDGTDRLLEIADKF-- 301 Query: 641 SKTDDTANAQQAEWRSWEVNKRLEYSLVKGITEFIEQDTEEAR----QQATRPIEVIEGP 696 KT + EWR+ V KRL ++LV GIT FI +DTEE R + RPI VIEGP Sbjct: 302 -KTGAAKKEENLEWRNQPVEKRLSHALVHGITNFIVEDTEEVRAKIAAEGGRPINVIEGP 360 Query: 697 LMDGMNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFIEASK----EQG---KTNGKM 749 LMDGMN+VGDLFG+GKMFLPQVVKSARVMKQAVA+L P+IE K E G + GK+ Sbjct: 361 LMDGMNIVGDLFGQGKMFLPQVVKSARVMKQAVAHLIPYIEEEKKLLAEAGADVRAKGKI 420 Query: 750 VIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITP 809 VIATVKGDVHDIGKNIV VVLQCNN+E+V++GVMV IL AK AD+IGLSGLITP Sbjct: 421 VIATVKGDVHDIGKNIVSVVLQCNNFEVVNMGVMVSCNDILAKAKVEGADIIGLSGLITP 480 Query: 810 SLDEMVNVAKEMERQGF----TIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNASRTVG 865 SL+EM VA EM+R + IPLLIGGATTS+ HTAVKI +Y GP VYV +ASR+V Sbjct: 481 SLEEMAYVASEMQRDDYFRVKKIPLLIGGATTSRVHTAVKIAPHYEGPVVYVPDASRSVS 540 Query: 866 VVAALLSDTQRDDFVARTRKEYETVRIQHGRKKPRTPPVTLEAARDNDFAFDWQAYTPPV 925 V ++LLSD ++ + +YE +R+QH KK P VTL AR N DW +Y P Sbjct: 541 VASSLLSDEGAAKYLDELKSDYERIRVQHANKK-ALPMVTLAEARANKTKVDWASYQPVK 599 Query: 926 AHRLGVQEVE-ASIETLRNYIDWTPFFMTWSLAGKYPRILEDEVVGVEAQRLFKDANDML 984 +G + + + L NYIDW PFF TW LAG YP IL DE+VG A+R+F D ML Sbjct: 600 PKFIGRRVFKNFDLSELANYIDWGPFFQTWDLAGPYPAILNDEIVGESARRVFSDGKSML 659 Query: 985 DKLSAEKTLNPRGVVGLFPANRVG-DDIEIYRDETRTHVINVSHHLRQQTEKTGF----- 1038 +L + L GV+ L PAN V DDIEIY DE+R+ V +LRQQ+ + Sbjct: 660 ARLIQGRWLQANGVIALLPANTVNDDDIEIYTDESRSEVALTWRNLRQQSVRPVVDGVMR 719 Query: 1039 ANYCLADFVAPKLSGKADYIGAFAVTGGLEEDALADAFEAQHDDYNKIMVKALADRLAEA 1098 N LADF+APK SG ADYIG FAVT GL D FE HDDY+ IM+KALADR AEA Sbjct: 720 PNRSLADFIAPKDSGVADYIGMFAVTAGLGVDVKEKQFEKDHDDYSAIMLKALADRFAEA 779 Query: 1099 FAEYLHERVRKVYWGYAPNENLSNEELIRENYQGIRPAPGYPACPEHTEKATIWELLEVE 1158 FAE LH RVR+ WGYA E LSN++LI E Y GIRPAPGYPACP+H K ++++L Sbjct: 780 FAEALHARVRRDLWGYANAETLSNDDLIAEKYHGIRPAPGYPACPDHLVKRDMFDVLHAT 839 Query: 1159 KHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQVEDYARRKGMSVTEVERWL 1218 + GM +TES AM P ASVSG+Y +HPDS Y++V +I +DQ+EDYA+R +S T+ ER L Sbjct: 840 E-IGMSVTESLAMLPAASVSGFYLAHPDSTYFSVGKIGQDQLEDYAKRMSLSKTDAERAL 898 Query: 1219 APNL 1222 AP L Sbjct: 899 APLL 902 Lambda K H 0.318 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 2609 Number of extensions: 113 Number of successful extensions: 10 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 1227 Length of database: 902 Length adjustment: 45 Effective length of query: 1182 Effective length of database: 857 Effective search space: 1012974 Effective search space used: 1012974 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.9 bits)
Align methionine synthase (EC 2.1.1.13) (characterized)
to candidate BPHYT_RS02310 BPHYT_RS02310 5-methyltetrahydrofolate--homocysteine methyltransferase
Query= BRENDA::P13009 (1227 letters) >FitnessBrowser__BFirm:BPHYT_RS02310 Length = 356 Score = 402 bits (1032), Expect = e-116 Identities = 202/330 (61%), Positives = 257/330 (77%), Gaps = 6/330 (1%) Query: 8 LRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFADWPCDLKGNNDLLVLSKPEVIAAI 67 L A L RIL+LDG MGTMIQ Y+L+EA +RGERF D+ D+KGNN+LL +++P++I I Sbjct: 23 LPALLKSRILILDGAMGTMIQRYKLDEARYRGERFKDYGRDIKGNNELLSITQPQIIREI 82 Query: 68 HNAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINFAAAKLARACADEWTARTPEKPR 127 H Y AGADIIETNTF +TT+A ADY ME L+ E+N +AKLARA D+++ TP+KPR Sbjct: 83 HEQYLAAGADIIETNTFGATTVAQADYGMEGLAIEMNLESAKLARAACDKYS--TPDKPR 140 Query: 128 YVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYRESTKALVEGGADLILIETVFDTL 187 +VAG +GPT +TASISPDVNDP RN+TFD L AAY E KAL++GGADL L+ET+FDTL Sbjct: 141 FVAGAIGPTPKTASISPDVNDPGARNVTFDELRAAYYEQAKALLDGGADLFLVETIFDTL 200 Query: 188 NAKAAVFAVKTEFEALGVELPIMISGTITDASGRTLSGQTTEAFYNSLRHAEALTFGLNC 247 NAKAA+FA+ FE G LPIMISGT+TDASGR LSGQT EAF+NSLRHA+ LTFGLNC Sbjct: 201 NAKAALFALDELFEDTGERLPIMISGTVTDASGRILSGQTVEAFWNSLRHAKPLTFGLNC 260 Query: 248 ALGPDELRQYVQELSRIAECYVTAHPNAGLPNAF---GEYDLDADTMAKQIREWAQAGFL 304 ALG +R Y+ EL+++ + YV+ +PNAGLPN G +L ADT + ++E+AQAG + Sbjct: 261 ALGAALMRPYIAELAKLCDTYVSCYPNAGLPNPMSDTGFDELPADT-SGLLKEFAQAGLV 319 Query: 305 NIVGGCCGTTPQHIAAMSRAVEGLAPRKLP 334 NI GGCCGTTP+HIAA+++A+ + PR+ P Sbjct: 320 NIAGGCCGTTPEHIAAIAQALAEVKPRQWP 349 Lambda K H 0.318 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1028 Number of extensions: 29 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 1227 Length of database: 356 Length adjustment: 38 Effective length of query: 1189 Effective length of database: 318 Effective search space: 378102 Effective search space used: 378102 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.4 bits)
Align candidate BPHYT_RS02305 BPHYT_RS02305 (methionine synthase)
to HMM TIGR02082 (metH: methionine synthase (EC 2.1.1.13))
../bin/blast/fastacmd -i /tmp/list.16452.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16452.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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