Align Aspartate kinase; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate BPHYT_RS12410 BPHYT_RS12410 aspartate kinase
Query= SwissProt::C3JXY0 (413 letters) >FitnessBrowser__BFirm:BPHYT_RS12410 Length = 416 Score = 511 bits (1316), Expect = e-149 Identities = 270/416 (64%), Positives = 329/416 (79%), Gaps = 12/416 (2%) Query: 1 MALIVQKFGGTSVGSVERIEQVADKVKKFRDAGDDLVVVLSAMSGETNRLIDLAKAISGD 60 MALIV K+GGTS+GSVERI+ VA +V K+ AG +VVV SAMSGETNRL+ LAK I+G Sbjct: 1 MALIVHKYGGTSMGSVERIKNVAKRVAKWHKAGHKMVVVPSAMSGETNRLLGLAKEITG- 59 Query: 61 QQPLPRELDVIVSTGEQVTIALLAMALNKRGVPAVSYTGSQVRILTDSAHTKARILQIDD 120 QP PRELD+I +TGEQV+ LLA+AL + GV AVSY G QV + TDSA TKARI +ID Sbjct: 60 -QPSPRELDMIAATGEQVSSGLLAIALQEAGVDAVSYAGWQVPVKTDSAFTKARISEIDG 118 Query: 121 QKIRTDLKAGRVVVVAGFQGVDEQGNITTLGRGGSDTTGVALAAALKADECQIYTDVDGV 180 +++ DL AG+VVV+ GFQG+D G+ITTLGRGGSDT+ VA+AAALKADEC IYTDVDGV Sbjct: 119 ERVLRDLDAGKVVVITGFQGIDPDGHITTLGRGGSDTSAVAVAAALKADECLIYTDVDGV 178 Query: 181 YTTDPRVVSVAQRLDKITFEEMLEMASLGSKVLQIRAVEFAGKYNVPLRVLHSFKE---- 236 YTTDPRVV A+RLD++TFEEMLEMASLGSKVLQIR+VEFAGKY V RVL S + Sbjct: 179 YTTDPRVVEEARRLDRVTFEEMLEMASLGSKVLQIRSVEFAGKYQVKTRVLSSLTDPLMP 238 Query: 237 -----GPGTLITIDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISGANI 291 GTLIT +E+E+ME+ +ISGIAF RDEA++ + GVPD PG+A++ILGP++ ANI Sbjct: 239 LDAEMKSGTLITFEEDETMEKAVISGIAFQRDEARIAVMGVPDKPGIAYQILGPVADANI 298 Query: 292 EVDMIVQNVSHDNTTDFTFTVHRNEYDAAERILQNTAK-EIGAREVVGDTKIAKVSIVGV 350 +VDMI+QN S + T FTFTV R +Y A IL K + A +V+GD K++KVS+VGV Sbjct: 299 DVDMIIQNQSVEGKTAFTFTVGRGDYQRAMDILTTQVKGHVQAEQVLGDPKVSKVSVVGV 358 Query: 351 GMRSHAGVASRMFEALAKESINIQMISTSEIKVSVVIEEKYLELAVRALHTAFELD 406 GMRSH G+AS MF L++E INIQMISTSEIK+SV+I+EKY+ELAVRALH AFELD Sbjct: 359 GMRSHVGIASTMFRTLSEEGINIQMISTSEIKISVLIDEKYMELAVRALHKAFELD 414 Lambda K H 0.316 0.133 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 518 Number of extensions: 15 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 413 Length of database: 416 Length adjustment: 31 Effective length of query: 382 Effective length of database: 385 Effective search space: 147070 Effective search space used: 147070 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate BPHYT_RS12410 BPHYT_RS12410 (aspartate kinase)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))
../bin/blast/fastacmd -i /tmp/list.21363.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.21363.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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