GapMind for Amino acid biosynthesis

 

Alignments for a candidate for trpD_1 in Burkholderia phytofirmans PsJN

Align Anthranilate synthase component 2; AS; ASII; Anthranilate synthase, GATase component; Anthranilate synthase, glutamine amidotransferase component; EC 4.1.3.27 (characterized)
to candidate BPHYT_RS17395 BPHYT_RS17395 anthranilate synthase subunit II

Query= SwissProt::P20576
         (201 letters)



>FitnessBrowser__BFirm:BPHYT_RS17395
          Length = 200

 Score =  254 bits (649), Expect = 7e-73
 Identities = 126/192 (65%), Positives = 150/192 (78%), Gaps = 5/192 (2%)

Query: 1   MLLMIDNYDSFTYNLVQYFGELKAEVKVVRNDELSVEQIEALAPERIVLSPGPCTPNEAG 60
           MLLMIDNYDSFTYNLVQYFGEL  +V+  RNDE+++++I  L PERI LSPGP  P  AG
Sbjct: 1   MLLMIDNYDSFTYNLVQYFGELGEDVRTYRNDEITLDEIAKLNPERICLSPGPSNPQHAG 60

Query: 61  VSLAVIERFAGKLPLLGVCLGHQSIGQAFGGEVVRARQVMHGKTSPIHHKDLGVFAGLAN 120
           ++L V+  F+GK P+LGVCLGHQ+IG+AFGG VVRA+ +MHGK S I     GVFA L  
Sbjct: 61  ITLDVLREFSGKTPILGVCLGHQAIGEAFGGRVVRAQTIMHGKVSTIETDCKGVFADLPK 120

Query: 121 PLTVTRYHSLVVKRESLPECLEVTAWTQHADGSLDEIMGVRHKTLNVEGVQFHPESILTE 180
              VTRYHSL ++RESLP+CLEV+AWT+  DG   EIMGVRHK L VEGVQFHPESIL+E
Sbjct: 121 HFVVTRYHSLAIERESLPDCLEVSAWTE--DG---EIMGVRHKELAVEGVQFHPESILSE 175

Query: 181 QGHELLANFLRQ 192
            GH LL NF++Q
Sbjct: 176 HGHALLENFVKQ 187


Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 194
Number of extensions: 5
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 200
Length adjustment: 21
Effective length of query: 180
Effective length of database: 179
Effective search space:    32220
Effective search space used:    32220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)

Align candidate BPHYT_RS17395 BPHYT_RS17395 (anthranilate synthase subunit II)
to HMM TIGR00566 (glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase)

Software error:

../bin/blast/fastacmd -i /tmp/list.12550.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.12550.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.