Align acetolactate synthase isozyme 2 large subunit; EC 2.2.1.6 (characterized)
to candidate BPHYT_RS10500 BPHYT_RS10500 acetolactate synthase
Query= CharProtDB::CH_003896 (548 letters) >FitnessBrowser__BFirm:BPHYT_RS10500 Length = 600 Score = 431 bits (1107), Expect = e-125 Identities = 252/577 (43%), Positives = 343/577 (59%), Gaps = 37/577 (6%) Query: 1 MNGAQWVVHALRAQGVNTVFGYPGGAIMPVYDALYDGGVEH----------LLCRHEQGA 50 M+GA ++ L QGV+TVFGY GGAI+P YDA++ H ++ +EQ A Sbjct: 1 MSGADIILRVLSEQGVDTVFGYSGGAILPTYDAVFRFNEMHAQTPERQIKLVVPANEQAA 60 Query: 51 AMAAIGYARATGKTGVCIATSGPGATNLITGLADALLDSIPVVAITGQVSAPFIGTDAFQ 110 A GYARA+GK GV + TSGPGATN +T +AD DSIPVV I GQV IGTDAFQ Sbjct: 61 GFMAAGYARASGKVGVFMVTSGPGATNAVTPIADCNGDSIPVVLICGQVPRAMIGTDAFQ 120 Query: 111 EVDVLGLSLACTKHSFLVQSLEELPRIMAEAFDVACSGRPGPVLVDIPKDIQ------LA 164 E V + AC K FLV +L + + AF+VA +GRPGPV+VD+PKDIQ Sbjct: 121 EAPVFNIMSACAKQVFLVTDPAKLEQTLRTAFEVARTGRPGPVVVDVPKDIQNWTGTYQG 180 Query: 165 SGDLEPWFTTVENEVTFPHAEVEQARQ-----MLAKAQKPMLYVGGGVGMAQAVPALREF 219 G LE + + A +++ ++ +LA++++P+LY GGG+ A A LR F Sbjct: 181 QGTLEFRGYSDRLRMVAKGARLDEGKRNDFFGLLAQSKRPLLYAGGGIITAGATAELRRF 240 Query: 220 LAATKMPATCTLKGLGAVEADYPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDRVTG 279 +P TL GLGA+ + LGMLGMHG AN+AV++CD LIAVGARFDDRV G Sbjct: 241 AERFGIPVVTTLMGLGAISVRHELGLGMLGMHGAACANYAVEDCDFLIAVGARFDDRVAG 300 Query: 280 -KLNTFAPHAS-VIHMDIDPAEMNKLRQAHVALQGDLNALL-------PALQQPLNQYDW 330 + + FAP A V H+DID AE+NK+++AH A GD L PA+Q L DW Sbjct: 301 GRPDAFAPRARHVAHIDIDEAEINKVKRAHWAHVGDAKESLLSLMKHGPAVQPRL---DW 357 Query: 331 QQHCAQLRDEHSWRYDHPGDAIYAPLLLKQLSDRKPADCVVTTDVGQHQMWAAQHIAHTR 390 +L+ + YD AI ++++LS +VTT VGQHQMWAAQ Sbjct: 358 LDRIKELKRVYGMNYDRNSPAIQPQFVVEKLSALTGGRAIVTTGVGQHQMWAAQFFDFVE 417 Query: 391 PENFITSSGLGTMGFGLPAAVGAQVARPNDTVVCISGDGSFMMNVQELGTVKRKQLPLKI 450 P +F+TS +GTMGFGLPAA+GAQ+ARP+ V+ I GDGS MN+ +L T +P+K+ Sbjct: 418 PRSFLTSGSMGTMGFGLPAAIGAQLARPDALVIDIDGDGSIRMNIGDLETATTYGVPVKV 477 Query: 451 VLLDNQRLGMVRQWQQLFFQER--YSETTLTDNPDFLMLASAFGIH-GQHITRKDQVEAA 507 +LL+N GM+RQWQ+LF++ R S+ +L DF+M A A G + + +++E Sbjct: 478 LLLNNLGDGMIRQWQRLFYEGRLCVSDKSL-HRKDFVMAAQADGFEFARRVATLNELEDQ 536 Query: 508 LDTMLNSDGPYLLHVSIDELENVWPLVPPGASNSEML 544 L + DGP L V +DE +V+P+V PG S + M+ Sbjct: 537 LKAFIEFDGPAFLEVMVDENADVFPMVGPGQSYANMV 573 Lambda K H 0.320 0.135 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 848 Number of extensions: 35 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 548 Length of database: 600 Length adjustment: 36 Effective length of query: 512 Effective length of database: 564 Effective search space: 288768 Effective search space used: 288768 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (25.0 bits)
Align candidate BPHYT_RS10500 BPHYT_RS10500 (acetolactate synthase)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.8562.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8562.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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