Align acetolactate synthase (subunit 1/2) (EC 2.2.1.6) (characterized)
to candidate BPHYT_RS06550 BPHYT_RS06550 acetolactate synthase
Query= BRENDA::P00894 (163 letters) >FitnessBrowser__BFirm:BPHYT_RS06550 Length = 163 Score = 191 bits (486), Expect = 4e-54 Identities = 93/163 (57%), Positives = 131/163 (80%), Gaps = 1/163 (0%) Query: 1 MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQI 60 MR I+SVLLENE GALSRV+GLFS RGYNIE+LTVAPT+D +LSRMTI ++G + V+EQI Sbjct: 1 MRHIISVLLENEPGALSRVVGLFSARGYNIETLTVAPTEDRSLSRMTIVSIGSDDVIEQI 60 Query: 61 EKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLY 120 K L++L++V++V +L +GAH+ERE+ML+K++A G R+E+KR ++IFRG+IIDVT Y Sbjct: 61 TKHLNRLIEVVKVVDLTEGAHIERELMLIKVRAVGKEREEMKRMSDIFRGRIIDVTEKTY 120 Query: 121 TVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGDKIMR 163 T++L G S KLDAF+ + D I+E R+G G+ RG++I++ Sbjct: 121 TIELTGASDKLDAFIEGL-DATAILETVRTGGSGIGRGERILK 162 Lambda K H 0.318 0.136 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 114 Number of extensions: 3 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 163 Length of database: 163 Length adjustment: 18 Effective length of query: 145 Effective length of database: 145 Effective search space: 21025 Effective search space used: 21025 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 43 (21.2 bits)
Align candidate BPHYT_RS06550 BPHYT_RS06550 (acetolactate synthase)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.31114.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31114.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.