Align 3-dehydroquinate dehydratase (EC 4.2.1.10) (characterized)
to candidate 352369 BT2842 3-dehydroquinate dehydratase (NCBI ptt file)
Query= BRENDA::Q48255 (167 letters) >FitnessBrowser__Btheta:352369 Length = 140 Score = 135 bits (339), Expect = 4e-37 Identities = 69/143 (48%), Positives = 99/143 (69%), Gaps = 7/143 (4%) Query: 1 MKILVIQGPNLNMLGHRDPRLYGMVTL-DQIHEIMQTFVKQGNLDVELEFFQTNFEGEII 59 M+I +I GPN+N+LG R+P +YG VT D + E+ + + D+E+++FQ+N EGE+I Sbjct: 1 MRIQIINGPNINLLGKREPSIYGSVTFEDYLAELRKRYA-----DLEIDYFQSNIEGEMI 55 Query: 60 DKIQESVGSDYEGIIINPGAFSHTSIAIADAIMLAGKPVIEVHLTNIQAREEFRKNSYTG 119 D IQ+ VG + +GII+N GA++HTSIA+ DAI PVIEVH++N+ +RE FR S Sbjct: 56 DCIQQ-VGFEVDGIILNAGAYTHTSIALQDAIRSVTSPVIEVHISNVHSRESFRHVSMIA 114 Query: 120 AACGGVIMGFGPLGYNMALMAMV 142 AC GVI GFG Y +AL A++ Sbjct: 115 CACKGVICGFGLNSYRLALEALL 137 Lambda K H 0.320 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 86 Number of extensions: 4 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 167 Length of database: 140 Length adjustment: 17 Effective length of query: 150 Effective length of database: 123 Effective search space: 18450 Effective search space used: 18450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 43 (21.2 bits)
Align candidate 352369 BT2842 (3-dehydroquinate dehydratase (NCBI ptt file))
to HMM TIGR01088 (aroQ: 3-dehydroquinate dehydratase, type II (EC 4.2.1.10))
../bin/blast/fastacmd -i /tmp/list.27675.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27675.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.