GapMind for Amino acid biosynthesis

 

Alignments for a candidate for hisC in Bacteroides thetaiotaomicron VPI-5482

Align Histidinol-phosphate aminotransferase; EC 2.6.1.9; Imidazole acetol-phosphate transaminase (uncharacterized)
to candidate 349730 BT0202 histidinol-phosphate aminotransferase (NCBI ptt file)

Query= curated2:Q64RE8
         (345 letters)



>FitnessBrowser__Btheta:349730
          Length = 346

 Score =  592 bits (1527), Expect = e-174
 Identities = 287/345 (83%), Positives = 317/345 (91%)

Query: 1   MKTLQELTRPNIWRLKPYSSARDEYSGAAASVFLDANENPYNLPHNRYPDPMQRDLKLEL 60
           MKTLQELTRPNIW+LKPYSSARDEY GA ASVFLDANENPYNLPHNRYPDPMQ +LK  L
Sbjct: 1   MKTLQELTRPNIWKLKPYSSARDEYKGAVASVFLDANENPYNLPHNRYPDPMQWELKTLL 60

Query: 61  SKIKKVAPAHIFLGNGSDEAIDLVFRAFCEPGRDNVVAIDPTYGMYQVCADVNDVEYRKV 120
           SKIKKV+P HIFLGNGSDEAIDLVFRAFCEP +DNVVAIDPTYGMYQVCADVN+VEYRKV
Sbjct: 61  SKIKKVSPQHIFLGNGSDEAIDLVFRAFCEPEKDNVVAIDPTYGMYQVCADVNNVEYRKV 120

Query: 121 LLHDDFQFSADELLAVADERTKMIFLCSPNNPTGNDLLRSEIIKVINDFEGLVILDEAYN 180
           LL ++FQFSA++LLA  DERTK+IFLCSPNNPTGNDLLRSEI K++ +FEGLVILDEAYN
Sbjct: 121 LLDENFQFSAEKLLAATDERTKLIFLCSPNNPTGNDLLRSEIEKILREFEGLVILDEAYN 180

Query: 181 DFSDEPSFLSELDKYPNLIILQTFSKAFGCAAIRLGMAFASEGIIGVLNKIKYPYNVNQL 240
           DFS+ PSFL ELDKYPNL++ QTFSKA+GCAAIRLGMAFASE IIG+L+KIKYPYNVNQL
Sbjct: 181 DFSEAPSFLEELDKYPNLVVFQTFSKAWGCAAIRLGMAFASEAIIGILSKIKYPYNVNQL 240

Query: 241 TQQQAIEMLHKYYEIERWVKTLKEERGYLEEAFVELPWVLQVFPSNANFFLARVTDAVKI 300
           TQQQAI MLHKYYEIERW+KTLKEER YLEE F +L   ++++PS++NFFLA+VTDAVKI
Sbjct: 241 TQQQAIAMLHKYYEIERWIKTLKEERDYLEEEFAKLSCTVRMYPSDSNFFLAKVTDAVKI 300

Query: 301 YNYLVGEGIIVRNRNSISLCGNCLRVTVGTRAENAKLIGALKKYQ 345
           YNYLVGEGIIVRNR+SISLC NCLRVTVGTR EN  L+ ALKKYQ
Sbjct: 301 YNYLVGEGIIVRNRHSISLCCNCLRVTVGTRVENNTLLAALKKYQ 345


Lambda     K      H
   0.321    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 557
Number of extensions: 13
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 346
Length adjustment: 29
Effective length of query: 316
Effective length of database: 317
Effective search space:   100172
Effective search space used:   100172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate 349730 BT0202 (histidinol-phosphate aminotransferase (NCBI ptt file))
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.22339.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.22339.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.