Align histidinol dehydrogenase (EC 1.1.1.23) (characterized)
to candidate 349729 BT0201 histidinol dehydrogenase (NCBI ptt file)
Query= BRENDA::P06988 (434 letters) >FitnessBrowser__Btheta:349729 Length = 428 Score = 440 bits (1132), Expect = e-128 Identities = 233/421 (55%), Positives = 300/421 (71%), Gaps = 7/421 (1%) Query: 15 EQQRQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTVTALKVSAEEIA 74 EQ +LL RPA++ +ES+ TV I++ V+A GD+A+ EY A FDK T++AL V++EEI Sbjct: 11 EQWAELLKRPALN-TESLFDTVRTIINKVRAEGDKAVLEYEAAFDKVTLSALTVTSEEIQ 69 Query: 75 AASERLSDELKQAMAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTRPVASVGLYIPGG 134 A +SDELK A+ +A +NIETFH++Q+ VET GV C Q + VGLYIPGG Sbjct: 70 KAEGLISDELKSAITLAKRNIETFHSSQRFVGKKVETMEGVTCWQKAVGIEKVGLYIPGG 129 Query: 135 SAPLFSTVLMLATPASIAGCKKVVLCSPPP----IADEILYAAQLCGVQDVFNVGGAQAI 190 +APLFSTVLMLA PA IAGC+++VLC+PP I IL+AAQL GV +F GG QAI Sbjct: 130 TAPLFSTVLMLAVPAKIAGCREIVLCTPPDKNGNIHPAILFAAQLAGVSKIFKAGGVQAI 189 Query: 191 AALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAGPSEVLVIADSGATPD 250 AA+A+GTESVPKV KIFGPGN +VT AK+ VS R AIDMPAGPSEV V+AD+ A P Sbjct: 190 AAMAYGTESVPKVYKIFGPGNQYVTAAKQLVSLR--DVAIDMPAGPSEVEVLADASANPV 247 Query: 251 FVASDLLSQAEHGPDSQVILLTPAADMARRVAEAVERQLAELPRAETARQALNASRLIVT 310 FVA+DLLSQAEHG DSQ +L+T + + V E V RQLA+LPR E A ++L S+LI+ Sbjct: 248 FVAADLLSQAEHGVDSQAMLITTSEKLQAEVMEEVNRQLAKLPRREIAAKSLENSKLILV 307 Query: 311 KDLAQCVEISNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPESAGDYASGTNHVLP 370 KD+ + +E++N Y PEHLI++T N E+ + + +AGSVFLG +PESAGDYASGTNH LP Sbjct: 308 KDMDEALELTNAYAPEHLIVETENYLEVAERVINAGSVFLGSLTPESAGDYASGTNHTLP 367 Query: 371 TYGYTATCSSLGLADFQKRMTVQELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNAL 430 T GY S + L F +++T QE+ +G + IE +AA E L AHKNAVT+R+N L Sbjct: 368 TNGYAKAYSGVSLDSFIRKITFQEILPQGMKVIGPAIEEMAANELLDAHKNAVTVRLNTL 427 Query: 431 K 431 K Sbjct: 428 K 428 Lambda K H 0.315 0.128 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 445 Number of extensions: 14 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 2 Number of HSP's successfully gapped: 1 Length of query: 434 Length of database: 428 Length adjustment: 32 Effective length of query: 402 Effective length of database: 396 Effective search space: 159192 Effective search space used: 159192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 51 (24.3 bits)
Align candidate 349729 BT0201 (histidinol dehydrogenase (NCBI ptt file))
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))
../bin/blast/fastacmd -i /tmp/list.32697.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.32697.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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