GapMind for Amino acid biosynthesis

 

Alignments for a candidate for hisD in Bacteroides thetaiotaomicron VPI-5482

Align histidinol dehydrogenase (EC 1.1.1.23) (characterized)
to candidate 349729 BT0201 histidinol dehydrogenase (NCBI ptt file)

Query= BRENDA::P06988
         (434 letters)



>FitnessBrowser__Btheta:349729
          Length = 428

 Score =  440 bits (1132), Expect = e-128
 Identities = 233/421 (55%), Positives = 300/421 (71%), Gaps = 7/421 (1%)

Query: 15  EQQRQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKTTVTALKVSAEEIA 74
           EQ  +LL RPA++ +ES+  TV  I++ V+A GD+A+ EY A FDK T++AL V++EEI 
Sbjct: 11  EQWAELLKRPALN-TESLFDTVRTIINKVRAEGDKAVLEYEAAFDKVTLSALTVTSEEIQ 69

Query: 75  AASERLSDELKQAMAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVTRPVASVGLYIPGG 134
            A   +SDELK A+ +A +NIETFH++Q+     VET  GV C Q    +  VGLYIPGG
Sbjct: 70  KAEGLISDELKSAITLAKRNIETFHSSQRFVGKKVETMEGVTCWQKAVGIEKVGLYIPGG 129

Query: 135 SAPLFSTVLMLATPASIAGCKKVVLCSPPP----IADEILYAAQLCGVQDVFNVGGAQAI 190
           +APLFSTVLMLA PA IAGC+++VLC+PP     I   IL+AAQL GV  +F  GG QAI
Sbjct: 130 TAPLFSTVLMLAVPAKIAGCREIVLCTPPDKNGNIHPAILFAAQLAGVSKIFKAGGVQAI 189

Query: 191 AALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAGPSEVLVIADSGATPD 250
           AA+A+GTESVPKV KIFGPGN +VT AK+ VS R    AIDMPAGPSEV V+AD+ A P 
Sbjct: 190 AAMAYGTESVPKVYKIFGPGNQYVTAAKQLVSLR--DVAIDMPAGPSEVEVLADASANPV 247

Query: 251 FVASDLLSQAEHGPDSQVILLTPAADMARRVAEAVERQLAELPRAETARQALNASRLIVT 310
           FVA+DLLSQAEHG DSQ +L+T +  +   V E V RQLA+LPR E A ++L  S+LI+ 
Sbjct: 248 FVAADLLSQAEHGVDSQAMLITTSEKLQAEVMEEVNRQLAKLPRREIAAKSLENSKLILV 307

Query: 311 KDLAQCVEISNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPESAGDYASGTNHVLP 370
           KD+ + +E++N Y PEHLI++T N  E+ + + +AGSVFLG  +PESAGDYASGTNH LP
Sbjct: 308 KDMDEALELTNAYAPEHLIVETENYLEVAERVINAGSVFLGSLTPESAGDYASGTNHTLP 367

Query: 371 TYGYTATCSSLGLADFQKRMTVQELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNAL 430
           T GY    S + L  F +++T QE+  +G   +   IE +AA E L AHKNAVT+R+N L
Sbjct: 368 TNGYAKAYSGVSLDSFIRKITFQEILPQGMKVIGPAIEEMAANELLDAHKNAVTVRLNTL 427

Query: 431 K 431
           K
Sbjct: 428 K 428


Lambda     K      H
   0.315    0.128    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 445
Number of extensions: 14
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 428
Length adjustment: 32
Effective length of query: 402
Effective length of database: 396
Effective search space:   159192
Effective search space used:   159192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)

Align candidate 349729 BT0201 (histidinol dehydrogenase (NCBI ptt file))
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.32697.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.32697.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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