Align Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 (characterized)
to candidate 350906 BT1378 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file)
Query= SwissProt::Q9X0C6 (253 letters) >FitnessBrowser__Btheta:350906 Length = 251 Score = 276 bits (706), Expect = 3e-79 Identities = 142/250 (56%), Positives = 179/250 (71%), Gaps = 1/250 (0%) Query: 1 MLAKRIIACLDVKDGRVVKGTNFENLRDSGDPVELGKFYSEIGIDELVFLDITASVEKRK 60 MLAKRII CLD+KDG+ VKGTNF NLR +GDPVELG+ YSE G DELVFLDITAS E RK Sbjct: 1 MLAKRIIPCLDIKDGQTVKGTNFVNLRQAGDPVELGRAYSEQGADELVFLDITASHEGRK 60 Query: 61 TMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENPSLITQIAQTF 120 T ELV+++A I+IPFTVGGGI++ L+ GADK+SIN++A+ NP LI IA+ F Sbjct: 61 TFTELVKRIAANINIPFTVGGGINELSDVDRLLNAGADKISINSSAIRNPQLIDDIAKNF 120 Query: 121 GSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKS 180 GSQ V+A+DAK+ + + + G+ T L W E ++RGAGEIL TS++ DG K+ Sbjct: 121 GSQVCVLAVDAKQTENGWKCYLNGGRIETDKELLAWTKEAQERGAGEILFTSMNHDGVKT 180 Query: 181 GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAG-ADAALAASVFHFREIDVRELKE 239 GY E + + ++P+IASGGAG EHF +AFL G ADAALAASVFHF EI + ELK Sbjct: 181 GYANEALASLADQLSIPVIASGGAGLKEHFRDAFLVGKADAALAASVFHFGEIKIPELKS 240 Query: 240 YLKKHGVNVR 249 YL G+ +R Sbjct: 241 YLCGEGITIR 250 Lambda K H 0.320 0.138 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 211 Number of extensions: 7 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 253 Length of database: 251 Length adjustment: 24 Effective length of query: 229 Effective length of database: 227 Effective search space: 51983 Effective search space used: 51983 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 46 (22.3 bits)
Align candidate 350906 BT1378 (imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file))
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)
../bin/blast/fastacmd -i /tmp/list.26785.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.26785.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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