Align branched-chain-amino-acid transaminase (EC 2.6.1.42) (characterized)
to candidate 353418 BT3892 branched-chain amino acid aminotransferase (NCBI ptt file)
Query= BRENDA::Q7BPX6 (340 letters) >FitnessBrowser__Btheta:353418 Length = 339 Score = 333 bits (855), Expect = 3e-96 Identities = 173/338 (51%), Positives = 228/338 (67%), Gaps = 4/338 (1%) Query: 5 LDWENLGFSYRNLPFRYIARFKDGKWSAGELTGDNQLHISESSPALHYGQQGFEGLKAYR 64 +DW NL F Y + F++G W E++ D L++ ++ LHYGQ+ FEGLKA+R Sbjct: 4 IDWANLSFGYMKTDYNVRINFRNGAWGELEVSSDEHLNLHMAATCLHYGQEAFEGLKAFR 63 Query: 65 TKDGSIQLFRPDQNAARLQKTARRLCMAEVSTEMFIDAVKQVVKANKDFVPPYGTGATLY 124 KDG +++FR ++NAARLQ T + + MAE+ TE F +A+ +VVK N+ F+PPY TGA+LY Sbjct: 64 GKDGKVRIFRLEENAARLQSTCQGILMAELPTERFKEAILKVVKLNERFIPPYETGASLY 123 Query: 125 LRPLLIGVGDVIGVKPADEYIFKVFAMPVGSYFKGGLAPSKFVISREYDRAAPLGTGGAK 184 +RPLLIG +GV PA+EY+F VF PVG YFKGG + + +VI RE+DRAAP GTG K Sbjct: 124 IRPLLIGTSAQVGVHPAEEYMFVVFVTPVGPYFKGGFSTNPYVIIREFDRAAPHGTGIYK 183 Query: 185 VGGNYAASLQAEVGAKASGYADAIYLDPSTHTKIEEVGAANFFGITADNEFITPLSPSIL 244 VGGNYAASL+A A GY+ YLD I+E GAANFFGI DN +ITP S SIL Sbjct: 184 VGGNYAASLRANKKAHDLGYSCEFYLDAKEKKYIDECGAANFFGI-KDNTYITPKSSSIL 242 Query: 245 PSITKYSLLYLAEHRLGLKAIEGEVYAKDLGKFVEAGACGTAAIISPIGRIDDGED--SY 302 PSIT SL+ LAE +G+K + ++L F EAGACGTAA+ISPI RIDD E+ SY Sbjct: 243 PSITNKSLMQLAED-MGIKVERRPIPEEELETFEEAGACGTAAVISPIQRIDDLENGKSY 301 Query: 303 IFHSETEVGPTVKRLYDELVGIQFGDVEAPEGWIVKVD 340 + + + GP +LY++L GIQ+GD GW+ V+ Sbjct: 302 VISKDGKPGPICTKLYNKLRGIQYGDEPDTHGWVTIVE 339 Lambda K H 0.318 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 350 Number of extensions: 20 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 340 Length of database: 339 Length adjustment: 28 Effective length of query: 312 Effective length of database: 311 Effective search space: 97032 Effective search space used: 97032 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate 353418 BT3892 (branched-chain amino acid aminotransferase (NCBI ptt file))
to HMM TIGR01123 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))
../bin/blast/fastacmd -i /tmp/list.19106.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19106.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.