Align acetolactate synthase isozyme 2 large subunit; EC 2.2.1.6 (characterized)
to candidate 351605 BT2077 acetolactate synthase large subunit (NCBI ptt file)
Query= CharProtDB::CH_003896 (548 letters) >FitnessBrowser__Btheta:351605 Length = 565 Score = 478 bits (1231), Expect = e-139 Identities = 253/558 (45%), Positives = 360/558 (64%), Gaps = 15/558 (2%) Query: 1 MNGAQWVVHALRAQGVNTVFGYPGGAIMPVYDALYD--GGVEHLLCRHEQGAAMAAIGYA 58 + GA+ ++ +L QGV T+FGYPGG+IMP +DALYD + H+L RHEQGAA AA GYA Sbjct: 6 ITGAEAMMRSLEHQGVTTIFGYPGGSIMPTFDALYDHQNTLNHILVRHEQGAAHAAQGYA 65 Query: 59 RATGKTGVCIATSGPGATNLITGLADALLDSIPVVAITGQVSAPFIGTDAFQEVDVLGLS 118 R +GK GVC+ TSGPGATN ITG+ADA++DS P+V I GQV F+GTDAFQEVD++G++ Sbjct: 66 RVSGKVGVCLVTSGPGATNTITGIADAMIDSTPIVVIAGQVGTGFLGTDAFQEVDLVGIT 125 Query: 119 LACTKHSFLVQSLEELPRIMAEAFDVACSGRPGPVLVDIPKDIQLASGDLEPWFTT-VEN 177 K S+ ++ E++ +A AF +A SGRPGPV++D K+ Q+ EP + + Sbjct: 126 QPIAKWSYQIRRAEDVAWAIARAFYIASSGRPGPVVLDFAKNAQVEKTKYEPTKQEFIRS 185 Query: 178 EVTFPHAE---VEQARQMLAKAQKPMLYVGGGVGMAQAVPALREFLAATKMPATCTLKGL 234 V P + V+ A +++ A++P++ VG GV + A LR F+ MPA CTL GL Sbjct: 186 YVPVPDTDEESVKAAAELINNAERPLVLVGQGVELGSAQEELRIFIEKADMPAGCTLLGL 245 Query: 235 GAVEADYPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDRVTGKLNTFAPHASVIHMD 294 A+ D+P GMLGMHG N +CD+LIAVG RFDDRVTG L T+A A VIH D Sbjct: 246 SALPTDHPLNKGMLGMHGNLGPNINTNKCDVLIAVGMRFDDRVTGNLATYAKQAKVIHFD 305 Query: 295 IDPAEMNKLRQAHVALQGDLNALLPALQQPLNQ------YDWQQHCAQLRDEHSWRYD-H 347 IDPAE+NK + +A+ GD L A+ L + D + + +E R + H Sbjct: 306 IDPAEVNKNVKVDIAVLGDCKKTLAAVTGLLKKNRHTEWVDSFKEYEAVEEEKVIRPELH 365 Query: 348 PG-DAIYAPLLLKQLSDRKPADCVVTTDVGQHQMWAAQHIAHTRPENFITSSGLGTMGFG 406 P D++ +++ +S+ + ++ TDVGQ+QM +A++ +TR + +TS GLGTMGFG Sbjct: 366 PATDSLSMGEVVRAVSEATRHEAILVTDVGQNQMISARYFKYTRERSIVTSGGLGTMGFG 425 Query: 407 LPAAVGAQVARPNDTVVCISGDGSFMMNVQELGTVKRKQLPLKIVLLDNQRLGMVRQWQQ 466 LPAA+GA RP+ TV GDG MN+QELGT+ ++ P+KI+ L+N LG VRQWQ Sbjct: 426 LPAAIGATFGRPDRTVCVFMGDGGLQMNIQELGTIMEQKAPVKIICLNNNYLGNVRQWQA 485 Query: 467 LFFQERYSETTLTDNPDFLMLASAFGIHGQHITRKDQVEAALDTMLNSDGPYLLHVSIDE 526 +FF RYS T + NPD++ +ASA+ I + + +++++AA+D ML++DG +LL + E Sbjct: 486 MFFNRRYSFTPML-NPDYMKIASAYDIPSKRVFSREELKAAIDEMLSTDGAFLLEACVVE 544 Query: 527 LENVWPLVPPGASNSEML 544 NV P+ PPG S ++ML Sbjct: 545 EGNVLPMTPPGGSVNQML 562 Lambda K H 0.320 0.135 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 771 Number of extensions: 32 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 548 Length of database: 565 Length adjustment: 36 Effective length of query: 512 Effective length of database: 529 Effective search space: 270848 Effective search space used: 270848 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (25.0 bits)
Align candidate 351605 BT2077 (acetolactate synthase large subunit (NCBI ptt file))
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.28787.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.28787.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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