GapMind for Amino acid biosynthesis

 

Alignments for a candidate for trpD_1 in Bacteroides thetaiotaomicron VPI-5482

Align Anthranilate synthase component II (characterized, see rationale)
to candidate 350059 BT0531 anthranilate synthase component II (NCBI ptt file)

Query= uniprot:Q8AAD4_BACTN
         (188 letters)



>FitnessBrowser__Btheta:350059
          Length = 188

 Score =  380 bits (975), Expect = e-110
 Identities = 188/188 (100%), Positives = 188/188 (100%)

Query: 1   MKILLLDNYDSFTYNLLHAVKELGATDVEVVRNDQINLDEVERFDKIILSPGPGIPEEAG 60
           MKILLLDNYDSFTYNLLHAVKELGATDVEVVRNDQINLDEVERFDKIILSPGPGIPEEAG
Sbjct: 1   MKILLLDNYDSFTYNLLHAVKELGATDVEVVRNDQINLDEVERFDKIILSPGPGIPEEAG 60

Query: 61  LLLPIIKRYAPTKSILGVCLGHQAIGEAFGARLENLKEVYHGVQTPISILQKDVLFEGLG 120
           LLLPIIKRYAPTKSILGVCLGHQAIGEAFGARLENLKEVYHGVQTPISILQKDVLFEGLG
Sbjct: 61  LLLPIIKRYAPTKSILGVCLGHQAIGEAFGARLENLKEVYHGVQTPISILQKDVLFEGLG 120

Query: 121 KEIPVGRYHSWVVSREGFPECLEITAESQEGQIMALRHKTYDVHGIQFHPESVLTPQGKE 180
           KEIPVGRYHSWVVSREGFPECLEITAESQEGQIMALRHKTYDVHGIQFHPESVLTPQGKE
Sbjct: 121 KEIPVGRYHSWVVSREGFPECLEITAESQEGQIMALRHKTYDVHGIQFHPESVLTPQGKE 180

Query: 181 IIKNFLNE 188
           IIKNFLNE
Sbjct: 181 IIKNFLNE 188


Lambda     K      H
   0.319    0.141    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 282
Number of extensions: 3
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 188
Length adjustment: 20
Effective length of query: 168
Effective length of database: 168
Effective search space:    28224
Effective search space used:    28224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 44 (21.6 bits)

Align candidate 350059 BT0531 (anthranilate synthase component II (NCBI ptt file))
to HMM TIGR00566 (glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase)

Software error:

../bin/blast/fastacmd -i /tmp/list.19442.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19442.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.