Align Anthranilate synthase component II (characterized, see rationale)
to candidate 350059 BT0531 anthranilate synthase component II (NCBI ptt file)
Query= uniprot:Q8AAD4_BACTN (188 letters) >FitnessBrowser__Btheta:350059 Length = 188 Score = 380 bits (975), Expect = e-110 Identities = 188/188 (100%), Positives = 188/188 (100%) Query: 1 MKILLLDNYDSFTYNLLHAVKELGATDVEVVRNDQINLDEVERFDKIILSPGPGIPEEAG 60 MKILLLDNYDSFTYNLLHAVKELGATDVEVVRNDQINLDEVERFDKIILSPGPGIPEEAG Sbjct: 1 MKILLLDNYDSFTYNLLHAVKELGATDVEVVRNDQINLDEVERFDKIILSPGPGIPEEAG 60 Query: 61 LLLPIIKRYAPTKSILGVCLGHQAIGEAFGARLENLKEVYHGVQTPISILQKDVLFEGLG 120 LLLPIIKRYAPTKSILGVCLGHQAIGEAFGARLENLKEVYHGVQTPISILQKDVLFEGLG Sbjct: 61 LLLPIIKRYAPTKSILGVCLGHQAIGEAFGARLENLKEVYHGVQTPISILQKDVLFEGLG 120 Query: 121 KEIPVGRYHSWVVSREGFPECLEITAESQEGQIMALRHKTYDVHGIQFHPESVLTPQGKE 180 KEIPVGRYHSWVVSREGFPECLEITAESQEGQIMALRHKTYDVHGIQFHPESVLTPQGKE Sbjct: 121 KEIPVGRYHSWVVSREGFPECLEITAESQEGQIMALRHKTYDVHGIQFHPESVLTPQGKE 180 Query: 181 IIKNFLNE 188 IIKNFLNE Sbjct: 181 IIKNFLNE 188 Lambda K H 0.319 0.141 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 282 Number of extensions: 3 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 188 Length of database: 188 Length adjustment: 20 Effective length of query: 168 Effective length of database: 168 Effective search space: 28224 Effective search space used: 28224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 44 (21.6 bits)
Align candidate 350059 BT0531 (anthranilate synthase component II (NCBI ptt file))
to HMM TIGR00566 (glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase)
../bin/blast/fastacmd -i /tmp/list.19442.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19442.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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