Align amino-acid acetyltransferase (characterized)
to candidate H281DRAFT_00444 H281DRAFT_00444 N-acetylglutamate synthase
Query= CharProtDB::CH_024150 (443 letters) >FitnessBrowser__Burk376:H281DRAFT_00444 Length = 462 Score = 401 bits (1031), Expect = e-116 Identities = 201/438 (45%), Positives = 297/438 (67%), Gaps = 7/438 (1%) Query: 8 ELVEGFRHSVPYINTHRGKTFVIMLGGEAIEHENFSSIVNDIGLLHSLGIRLVVVYGARP 67 + V+ R PYI+ R KTFV+ GGE + +++V+DI LL ++GI++V+V+G+RP Sbjct: 29 QFVDWMRSVAPYIHAFRNKTFVVGFGGEVVHQGLLNALVSDIALLQAMGIQIVLVHGSRP 88 Query: 68 QIDANLAAHHHEPLYHKNIRVTDAKTLELVKQAAGTLQLDITARLSMSLNNTPLQGAHIN 127 Q++ ++ H E + +R+TDA+ LE K+AAG ++LDI A +S L NTP+ AHI+ Sbjct: 89 QVEEQMSLHGVESEFSHGMRITDARALESAKEAAGEVRLDIEAAISQGLPNTPMAHAHIS 148 Query: 128 VVSGNFIIAQPLGVDDGVDYCHSGRIRRIDEDAIHRQLDSGAIVLMGPVAVSVTGESFNL 187 VVSGNF+ A+P+G+ DGVD+ H+G +R+ID D+I L S +VL+ P+ S TGE+FNL Sbjct: 149 VVSGNFVTARPVGILDGVDFAHTGVVRKIDADSIRHSLASRKLVLLSPLGFSPTGEAFNL 208 Query: 188 TSEEIATQLAIKLKAEKMIGFCSSQGV--TNDDG-DIVSELFPNEAQARVEAQEEKGDYN 244 E++A+ AI L+A+K++ + G+ +DG +++ EL ++A E+ E GD Sbjct: 209 AMEDVASAAAIALRADKIVFLTETPGLMQAGEDGTELIRELSLDDAYKLHESGEVTGDAG 268 Query: 245 SGTVRFLRGAVKACRSGVRRCHLISYQEDGALLQELFSRDGIGTQIVMESAEQIRRATIN 304 +L+ +++ACR GV R H+I Y DG+LL ELF DG+GT I E+ E +R AT + Sbjct: 269 F----YLKHSIRACRGGVARAHIIPYALDGSLLLELFLHDGVGTMISYENLESLREATPD 324 Query: 305 DIGGILELIRPLEQQGILVRRSREQLEMEIDKFTIIQRDNTTIACAALYPFPEEKIGEMA 364 D+GGIL LI PLE G LVRR R Q+E +ID F++I+ D CAALYP+ +E+IGEMA Sbjct: 325 DVGGILALIEPLESDGTLVRRGRHQIERDIDHFSVIEHDGVLFGCAALYPYTQERIGEMA 384 Query: 365 CVAVHPDYRSSSRGEVLLERIAAQAKQSGLSKLFVLTTRSIHWFQERGFTPVDIDLLPES 424 C+ V P+ + + GE LL+RI +A+ GL+++FVLTTR+ HWF +RGF V +D LPE Sbjct: 385 CLTVAPEAQGTGDGERLLKRIEQRARARGLTRIFVLTTRTEHWFLKRGFVKVTVDDLPED 444 Query: 425 KKQLYNYQRKSKVLMADL 442 +++LYN+QRKS VLM L Sbjct: 445 RRRLYNWQRKSLVLMKQL 462 Lambda K H 0.319 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 508 Number of extensions: 19 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 443 Length of database: 462 Length adjustment: 33 Effective length of query: 410 Effective length of database: 429 Effective search space: 175890 Effective search space used: 175890 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate H281DRAFT_00444 H281DRAFT_00444 (N-acetylglutamate synthase)
to HMM TIGR01890 (argA: amino-acid N-acetyltransferase (EC 2.3.1.1))
../bin/blast/fastacmd -i /tmp/list.17214.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.17214.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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