GapMind for Amino acid biosynthesis

 

Alignments for a candidate for argC in Paraburkholderia bryophila 376MFSha3.1

Align N-acetyl-gamma-glutamyl-phosphate reductase; AGPR; EC 1.2.1.38; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase (uncharacterized)
to candidate H281DRAFT_05840 H281DRAFT_05840 N-acetyl-gamma-glutamyl-phosphate reductase

Query= curated2:Q8Y339
         (337 letters)



>FitnessBrowser__Burk376:H281DRAFT_05840
          Length = 315

 Score =  422 bits (1084), Expect = e-123
 Identities = 209/313 (66%), Positives = 244/313 (77%)

Query: 1   MAFKVFVDGQEGTTGLRLLDYLSQRDDIELLRIAEDRRKDPAERAKFLNAADVAFLCLPD 60
           M+ KVFVDGQEGTTGL++ +YLSQR D+E+LRI E +RKD  ER + +NA+DV FLCLPD
Sbjct: 1   MSTKVFVDGQEGTTGLKIFEYLSQRADVEILRIDEAKRKDIEERRRLINASDVTFLCLPD 60

Query: 61  VASREAVSLVDNPNTCIIDASTAFRTSDDWAYGLPELAPGQRERLRNSKRIAVPGCHASA 120
           VASRE+ SLV+N  T +IDASTAFRTS DWAYGLPELA  QRERLR +KRIAVPGCHASA
Sbjct: 61  VASRESASLVENERTVLIDASTAFRTSADWAYGLPELARSQRERLRTAKRIAVPGCHASA 120

Query: 121 FVLLMRPLVEAGIVPADYPITAFSLTGYSGGGKKMIADYLAADNPKLQSPRPYALALTHK 180
           FVL MRPLV+AG+V  D+   A+S+TGYSGGGKKMIADY A  N KL+SPRPYAL LTHK
Sbjct: 121 FVLAMRPLVDAGVVAPDFDAHAYSITGYSGGGKKMIADYEAGGNAKLKSPRPYALGLTHK 180

Query: 181 HLPEMRVQSKLALPPIFTPVVGNFLKGLAVTIGLHPQHLASKVSPADIAKVFADYYQGEQ 240
           HLPEM   + L   PIFTP+VG+F KGLAVT    P+ LA K +P  +    A+YY GE 
Sbjct: 181 HLPEMAAHTGLTSAPIFTPIVGDFYKGLAVTTYFSPRQLARKTTPQQVQAHLAEYYAGEA 240

Query: 241 FIRVAPADNVETLDNGFFDVQGANDTNRADLFVFGSDERMVVTARLDNLGKGAAGAAVQC 300
           F+RVAP D    LD+GFFDVQ  NDTNR DLFVFG+ ER V  ARLDNLGKGA+GAA+QC
Sbjct: 241 FVRVAPFDAEANLDSGFFDVQANNDTNRVDLFVFGTAERFVTVARLDNLGKGASGAAIQC 300

Query: 301 MNVHLGVDEATSL 313
           MN+ +G  E + L
Sbjct: 301 MNLAIGAAEESGL 313


Lambda     K      H
   0.320    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 351
Number of extensions: 13
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 315
Length adjustment: 28
Effective length of query: 309
Effective length of database: 287
Effective search space:    88683
Effective search space used:    88683
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate H281DRAFT_05840 H281DRAFT_05840 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01851 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.12932.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.12932.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.