Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate H281DRAFT_04403 H281DRAFT_04403 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968 (1073 letters) >FitnessBrowser__Burk376:H281DRAFT_04403 Length = 1084 Score = 1454 bits (3765), Expect = 0.0 Identities = 749/1089 (68%), Positives = 871/1089 (79%), Gaps = 23/1089 (2%) Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60 MPKRTDIKSILI+GAGPI+IGQACEFDYSGAQACKALREEGY+VILVNSNPATIMTDP Sbjct: 1 MPKRTDIKSILIIGAGPIIIGQACEFDYSGAQACKALREEGYKVILVNSNPATIMTDPNT 60 Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120 AD TYIEPI WEVV +II KERPDA+LPTMGGQTALNCAL+L GVLE++ V +IGA+ Sbjct: 61 ADVTYIEPITWEVVERIIAKERPDAILPTMGGQTALNCALDLHAHGVLEKYKVELIGASP 120 Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADV-------GFPCIIRPSFT 173 +AIDKAEDR++F AM KIGL +A+SG AH+MEEAL V A + G+P +IRPSFT Sbjct: 121 EAIDKAEDRQKFKDAMTKIGLGSAKSGTAHSMEEALQVQARIAVETGSGGYPVVIRPSFT 180 Query: 174 MGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCS 233 +GGSGGGIAYNREEFEEIC RGLDLSPT+ELLI+ESL+GWKEYEMEVVRDK DNCIIVCS Sbjct: 181 LGGSGGGIAYNREEFEEICKRGLDLSPTRELLIEESLLGWKEYEMEVVRDKKDNCIIVCS 240 Query: 234 IENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNG 293 IEN D MGIHTGDSITVAPAQTLTDKEYQ++RNAS+AVLREIGV+TGGSNVQF++NPK+G Sbjct: 241 IENLDPMGIHTGDSITVAPAQTLTDKEYQVLRNASLAVLREIGVDTGGSNVQFSINPKDG 300 Query: 294 RLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSID 353 R+IVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDEL N+ITGG+TPASFEP+ID Sbjct: 301 RMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELKNEITGGQTPASFEPTID 360 Query: 354 YVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKV 413 YVVTKIPRF FEKF A+ RLTTQMKSVGEVMAIGRT QES QKALRGLEVG G D K Sbjct: 361 YVVTKIPRFAFEKFREADSRLTTQMKSVGEVMAIGRTFQESFQKALRGLEVGVDGLDEKT 420 Query: 414 SLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLE 473 D +I RE+ +AG DRIWY+ DAFR G++ +F T+ID WFL QIE+++ E Sbjct: 421 DNRD-----EIIREIGEAGPDRIWYVGDAFRIGMTAQEIFEETSIDPWFLAQIEQIILKE 475 Query: 474 EKVAEVGITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCA 533 + +A + L+ + L+ LK+ GF+D RLAKL G + AE+R R + ++ PVYKRVDTCA Sbjct: 476 KALAGRTLASLSKEELKYLKQSGFSDRRLAKLVGAKPAEVRARRIELNVRPVYKRVDTCA 535 Query: 534 AEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDG 593 AEFAT TAYMYSTYEEECEANP T+ +KIMVLGGGPNRIGQGIEFDYCCVHA+LA+REDG Sbjct: 536 AEFATKTAYMYSTYEEECEANP-TNNKKIMVLGGGPNRIGQGIEFDYCCVHAALAMREDG 594 Query: 594 YETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARA 653 YETIMVNCNPETVSTDYDTSDRLYFE +TLEDVLEIV EKP GVIVQYGGQTPLKLA Sbjct: 595 YETIMVNCNPETVSTDYDTSDRLYFESLTLEDVLEIVDKEKPVGVIVQYGGQTPLKLALD 654 Query: 654 LEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLV 713 LEA GVP+IGTSPD ID AEDRERFQ ++ L L+QP N T A + A++ A EIGYPLV Sbjct: 655 LEANGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALKLADEIGYPLV 714 Query: 714 VRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMV 773 VRPSYVLGGRAMEIV++ DL RY + AV VSND+PVLLD FL+DA+E DVD I DGE V Sbjct: 715 VRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCISDGEAV 774 Query: 774 LIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV- 832 IGG+MEHIEQAGVHSGDSACSLP Y+LS E +++Q +A L V GLMNVQFA+ Sbjct: 775 FIGGVMEHIEQAGVHSGDSACSLPPYSLSGETIAELKRQTGAMAKALNVVGLMNVQFAIQ 834 Query: 833 --------KNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVI 884 K + +Y++EVNPRA+RTVP+VSKAT +PLAK+AAR M G+ LA QGVTKE+ Sbjct: 835 QVPQADGSKQDIIYVLEVNPRASRTVPYVSKATSLPLAKIAARAMVGQKLAAQGVTKEID 894 Query: 885 PPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGR 944 PPY+SVKE V PF KFP VDP+LGPEMRSTGEVMGVG+TF EA K+QL + S + + G Sbjct: 895 PPYFSVKEAVFPFVKFPAVDPVLGPEMRSTGEVMGVGQTFGEALFKSQLAAGSRLPESGT 954 Query: 945 ALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDR 1004 LL+V + DK + V++A L + G+ + AT GTA + AG+ ++VNKV +GRPHI D Sbjct: 955 VLLTVMDADKPKAVEVARMLHELGYPIVATKGTAAAIEAAGVPVKVVNKVKDGRPHIVDM 1014 Query: 1005 IKNGEYTYIINTT-SGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVI 1063 IKNGE + T R AI DSR IR SA KV Y TT++G A L +V Sbjct: 1015 IKNGEIALVFTTVDETRAAIADSRSIRMSAQANKVTYYTTMSGARAAVEGLRYLKDLEVY 1074 Query: 1064 SVQEMHAQI 1072 +Q +HA++ Sbjct: 1075 DLQGLHARL 1083 Lambda K H 0.318 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 3133 Number of extensions: 134 Number of successful extensions: 18 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 1073 Length of database: 1084 Length adjustment: 46 Effective length of query: 1027 Effective length of database: 1038 Effective search space: 1066026 Effective search space used: 1066026 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.9 bits)
Align candidate H281DRAFT_04403 H281DRAFT_04403 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.28609.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.28609.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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