Align glutamyl-tRNAGln amidotransferase subunit A (EC 6.3.5.7) (characterized)
to candidate H281DRAFT_02221 H281DRAFT_02221 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A
Query= metacyc::MONOMER-13955 (485 letters) >FitnessBrowser__Burk376:H281DRAFT_02221 Length = 495 Score = 468 bits (1205), Expect = e-136 Identities = 247/494 (50%), Positives = 335/494 (67%), Gaps = 15/494 (3%) Query: 3 LFDHKITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEAV 62 + + +TEL+ + KE +L KRI A + + AF+ +D + A AK D + Sbjct: 1 MHEKSLTELRAALAAKECSAVELAQLYLKRIDAANS-LNAFIQVDADLTLAQAKAADALL 59 Query: 63 DGRSEHGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGKL 122 G L G+PI KD VTKG R+T SK+L N++ +DATVV+RLQ A V +GK Sbjct: 60 HA-GHGGPLTGLPIAHKDVFVTKGWRSTAGSKMLSNYESPFDATVVERLQKAGMVCVGKT 118 Query: 123 NMDEFAMGSSTENSAYKLTKNPWNLDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQP 182 NMDEFAMGSS ENS + +NPW+ VPGGSSGGSAAAVAA P + G+DTGGSIRQP Sbjct: 119 NMDEFAMGSSNENSYFGPVQNPWDRQAVPGGSSGGSAAAVAARLAPAATGTDTGGSIRQP 178 Query: 183 ASFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDSTSAN 242 ASF G+ G+KPTYGRVSRYG++AFASSLDQ GP+ ++ D A LL A++G D+ DSTS Sbjct: 179 ASFSGITGIKPTYGRVSRYGMIAFASSLDQGGPMAQSAADCATLLNAMAGFDERDSTSLV 238 Query: 243 VDVPDFLSSLTGDIK---------GLKIAVPKEYLGEGVGKEARESVLAALKVLEGLGAT 293 D D+ L K GL+I +PKEY G G+ + R S+ AALK E LGAT Sbjct: 239 RDDEDYTRYLGQPWKQDGAGKPLAGLRIGLPKEYFGAGLADDVRASIDAALKEYEALGAT 298 Query: 294 WEEVSLPHSKYALATYYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFGN 353 EVSLP ++ ++ YY+++ +EAS+NL+RFDG+R+G+R +L+D+YK++RAEGFG Sbjct: 299 LVEVSLPKTELSIPVYYVIAPAEASSNLSRFDGVRFGHRAAEYRDLLDMYKKSRAEGFGP 358 Query: 354 EVKRRIMLGTFALSSGYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIGE 413 EVKRRIM+G + LS GYYDAYY +AQK+R +I +DF++ F++ DVI+GP P+ A+ +G Sbjct: 359 EVKRRIMVGAYVLSHGYYDAYYLQAQKIRRIIAQDFQEAFKQCDVIMGPVAPSVAWDLGA 418 Query: 414 NTKDPLTMYANDILTIPVNLAGVPGISVPCGLADGL----PLGLQIIGKHFDESTVYRVA 469 DP+ MY D+ T+ V+LAG+PG+SVPCG G P+GLQIIG +F+E+ + +VA Sbjct: 419 KGDDPVQMYLADVYTLSVSLAGLPGMSVPCGFGAGANAQRPVGLQIIGNYFNEARMLQVA 478 Query: 470 HAFEQATDHHKAKP 483 AF++ATD H+ P Sbjct: 479 DAFQRATDWHRKAP 492 Lambda K H 0.315 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 587 Number of extensions: 23 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 485 Length of database: 495 Length adjustment: 34 Effective length of query: 451 Effective length of database: 461 Effective search space: 207911 Effective search space used: 207911 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.6 bits)
Align candidate H281DRAFT_02221 H281DRAFT_02221 (aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.3407.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.3407.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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