GapMind for Amino acid biosynthesis

 

Alignments for a candidate for aroD in Paraburkholderia bryophila 376MFSha3.1

Align 3-dehydroquinate dehydratase (EC 4.2.1.10) (characterized)
to candidate H281DRAFT_03215 H281DRAFT_03215 3-dehydroquinate dehydratase

Query= BRENDA::W6JLW3
         (160 letters)



>FitnessBrowser__Burk376:H281DRAFT_03215
          Length = 151

 Score =  179 bits (455), Expect = 1e-50
 Identities = 82/142 (57%), Positives = 108/142 (76%)

Query: 17  ITVLNGPNLNMLGLRQPGIYGHATLDDVEQVCIQAAERLDVAIDFRQTNGEGELVSWVQE 76
           + VLNGPNLN+LG R+P IYG  TLDDV ++C  A ERLD++IDF Q+N E +L+ W+  
Sbjct: 6   VLVLNGPNLNLLGTREPAIYGAETLDDVAKLCRDAGERLDLSIDFCQSNAEHQLIDWLHA 65

Query: 77  CRGRADGIVINPAAYGHTSIALLDALLAVELPVVEVHISNIHRREPFRHHTYVSQAAIGV 136
            R + DGIVINPAAY HTS+A+ DAL A+E PV+EVHISN+HRREPFRHH+YVS  A  +
Sbjct: 66  ARTKVDGIVINPAAYTHTSVAIADALSAIEKPVIEVHISNVHRREPFRHHSYVSAVADAI 125

Query: 137 ICGLGVRGYAHALQAITDMIED 158
           I G G +GY  AL+ +  ++++
Sbjct: 126 IVGCGTQGYVLALERMATILKN 147


Lambda     K      H
   0.322    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 96
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 151
Length adjustment: 17
Effective length of query: 143
Effective length of database: 134
Effective search space:    19162
Effective search space used:    19162
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 43 (21.2 bits)

Align candidate H281DRAFT_03215 H281DRAFT_03215 (3-dehydroquinate dehydratase)
to HMM TIGR01088 (aroQ: 3-dehydroquinate dehydratase, type II (EC 4.2.1.10))

Software error:

../bin/blast/fastacmd -i /tmp/list.1643.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1643.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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