Align cysteine synthase (EC 2.5.1.47) (characterized)
to candidate H281DRAFT_03911 H281DRAFT_03911 cysteine synthase
Query= BRENDA::P29848 (303 letters) >FitnessBrowser__Burk376:H281DRAFT_03911 Length = 300 Score = 362 bits (929), Expect = e-105 Identities = 189/294 (64%), Positives = 219/294 (74%), Gaps = 4/294 (1%) Query: 3 TLEQTIGNTPLVKLQRLGPDN----GSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEI 58 T+E TIGNTPLV+L RL D + + KLEGNNPAGSVKDR ALSMI +AE RG I Sbjct: 5 TIEDTIGNTPLVQLVRLPDDEIRSRNNVVLAKLEGNNPAGSVKDRPALSMIKKAEARGRI 64 Query: 59 KPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQG 118 KPGD LIE+TSGNTGIALAM AA++GY+M L+MP+++S ERR +M AYGA++IL G Sbjct: 65 KPGDTLIESTSGNTGIALAMAAAIRGYKMVLIMPEDLSVERRQSMAAYGAQIILTPVTGG 124 Query: 119 MEGARDLALAMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGT 178 ME ARDLA M G+G +LDQF NPDNP AH TGPEIWR T GRITHFVSSMGTTGT Sbjct: 125 MEYARDLAEQMQRDGKGIILDQFANPDNPAAHVEGTGPEIWRDTEGRITHFVSSMGTTGT 184 Query: 179 ITGVSRFLREQEKPVTIVGLQPEEGSSIPGIRRWPAEYMPGIFNASLVDEVLDIHQNDAE 238 I GVS +L++Q + + IVG QPEEGS IPGIR+WP YMP IF+ S VD V ++ Q AE Sbjct: 185 IMGVSSYLKQQNQAIEIVGAQPEEGSRIPGIRKWPEAYMPKIFDRSRVDRVENVSQAAAE 244 Query: 239 NTMRELAVREGIFCGVSSGGAVAGALRVARATPGAIVVAIICDRGDRYLSTGVF 292 R LA EGIF G+SSGGA ALRVAR A +V I+CDRGDRYLSTGVF Sbjct: 245 AMARRLASVEGIFAGISSGGACEVALRVARQVENATIVFIVCDRGDRYLSTGVF 298 Lambda K H 0.316 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 312 Number of extensions: 9 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 303 Length of database: 300 Length adjustment: 27 Effective length of query: 276 Effective length of database: 273 Effective search space: 75348 Effective search space used: 75348 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 48 (23.1 bits)
Align candidate H281DRAFT_03911 H281DRAFT_03911 (cysteine synthase)
to HMM TIGR01138 (cysM: cysteine synthase B (EC 2.5.1.47))
../bin/blast/fastacmd -i /tmp/list.14912.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14912.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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