GapMind for Amino acid biosynthesis

 

Alignments for a candidate for cysK in Paraburkholderia bryophila 376MFSha3.1

Align cysteine synthase (EC 2.5.1.47) (characterized)
to candidate H281DRAFT_03911 H281DRAFT_03911 cysteine synthase

Query= BRENDA::P29848
         (303 letters)



>FitnessBrowser__Burk376:H281DRAFT_03911
          Length = 300

 Score =  362 bits (929), Expect = e-105
 Identities = 189/294 (64%), Positives = 219/294 (74%), Gaps = 4/294 (1%)

Query: 3   TLEQTIGNTPLVKLQRLGPDN----GSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEI 58
           T+E TIGNTPLV+L RL  D      + +  KLEGNNPAGSVKDR ALSMI +AE RG I
Sbjct: 5   TIEDTIGNTPLVQLVRLPDDEIRSRNNVVLAKLEGNNPAGSVKDRPALSMIKKAEARGRI 64

Query: 59  KPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQG 118
           KPGD LIE+TSGNTGIALAM AA++GY+M L+MP+++S ERR +M AYGA++IL     G
Sbjct: 65  KPGDTLIESTSGNTGIALAMAAAIRGYKMVLIMPEDLSVERRQSMAAYGAQIILTPVTGG 124

Query: 119 MEGARDLALAMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGT 178
           ME ARDLA  M   G+G +LDQF NPDNP AH   TGPEIWR T GRITHFVSSMGTTGT
Sbjct: 125 MEYARDLAEQMQRDGKGIILDQFANPDNPAAHVEGTGPEIWRDTEGRITHFVSSMGTTGT 184

Query: 179 ITGVSRFLREQEKPVTIVGLQPEEGSSIPGIRRWPAEYMPGIFNASLVDEVLDIHQNDAE 238
           I GVS +L++Q + + IVG QPEEGS IPGIR+WP  YMP IF+ S VD V ++ Q  AE
Sbjct: 185 IMGVSSYLKQQNQAIEIVGAQPEEGSRIPGIRKWPEAYMPKIFDRSRVDRVENVSQAAAE 244

Query: 239 NTMRELAVREGIFCGVSSGGAVAGALRVARATPGAIVVAIICDRGDRYLSTGVF 292
              R LA  EGIF G+SSGGA   ALRVAR    A +V I+CDRGDRYLSTGVF
Sbjct: 245 AMARRLASVEGIFAGISSGGACEVALRVARQVENATIVFIVCDRGDRYLSTGVF 298


Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 312
Number of extensions: 9
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 300
Length adjustment: 27
Effective length of query: 276
Effective length of database: 273
Effective search space:    75348
Effective search space used:    75348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate H281DRAFT_03911 H281DRAFT_03911 (cysteine synthase)
to HMM TIGR01138 (cysM: cysteine synthase B (EC 2.5.1.47))

Software error:

../bin/blast/fastacmd -i /tmp/list.14912.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.14912.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.