GapMind for Amino acid biosynthesis

 

Alignments for a candidate for hisC in Paraburkholderia bryophila 376MFSha3.1

Align Histidinol-phosphate aminotransferase 2; EC 2.6.1.9; Imidazole acetol-phosphate transaminase 2 (uncharacterized)
to candidate H281DRAFT_05654 H281DRAFT_05654 histidinol phosphate aminotransferase apoenzyme

Query= curated2:Q46WL3
         (366 letters)



>FitnessBrowser__Burk376:H281DRAFT_05654
          Length = 356

 Score =  461 bits (1185), Expect = e-134
 Identities = 236/348 (67%), Positives = 275/348 (79%), Gaps = 4/348 (1%)

Query: 12  IIRDDVRAMGAYHVPDSHGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPVPSSEAL 71
           IIR DV AM +Y V D+ G +KLDAMENP+ LPP L + L   L  VALNRYP P  EAL
Sbjct: 7   IIRRDVLAMTSYPVADATGYIKLDAMENPFPLPPVLAAHLGEHLAGVALNRYPAPRPEAL 66

Query: 72  RAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQFAGLE 131
             K+K VM VPAG +VLLGNGSDEIISM+++A A+PGAKV+APVPGFVMY MSA+ A LE
Sbjct: 67  IEKIKRVMGVPAGCDVLLGNGSDEIISMVSIACAKPGAKVLAPVPGFVMYQMSAKLANLE 126

Query: 132 FVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCR 191
           F+GVPL ADFTLD  AMLAA+AEH+PA+VYLAYPNNPTG LFD ADME I+ AA     +
Sbjct: 127 FIGVPLNADFTLDTEAMLAAIAEHEPAVVYLAYPNNPTGTLFDDADMERIIAAA----TK 182

Query: 192 SLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGDPQWLEQLDKVR 251
           SLVV+DEAYQPFAQ SW+ R   F N++VMRTVSKLGLAGIRLGY+ G P WL +LDKVR
Sbjct: 183 SLVVIDEAYQPFAQRSWLPRADAFDNVVVMRTVSKLGLAGIRLGYLVGKPAWLTELDKVR 242

Query: 252 PPYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAANFLLAR 311
           PPYN NVLT+A A F L+HV VLD QAAQLR ER+++A+ +A   G  VFPSA NFLL R
Sbjct: 243 PPYNTNVLTQAAADFLLDHVDVLDSQAAQLRDERTKLAQAVAELPGAEVFPSAGNFLLVR 302

Query: 312 VPDAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVSTPEENAQFLEA 359
           VPDA+  F+ LLA +VLIKNVSKMH LLANC+R+TV +PEENAQ + A
Sbjct: 303 VPDASVLFETLLAARVLIKNVSKMHALLANCVRLTVGSPEENAQLIAA 350


Lambda     K      H
   0.321    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 426
Number of extensions: 13
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 356
Length adjustment: 29
Effective length of query: 337
Effective length of database: 327
Effective search space:   110199
Effective search space used:   110199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)

Align candidate H281DRAFT_05654 H281DRAFT_05654 (histidinol phosphate aminotransferase apoenzyme)
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.16739.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16739.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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