Align acetohydroxyacid isomeroreductase (EC 1.1.1.86) (characterized)
to candidate H281DRAFT_04553 H281DRAFT_04553 ketol-acid reductoisomerase
Query= metacyc::MONOMER-18814 (338 letters) >FitnessBrowser__Burk376:H281DRAFT_04553 Length = 338 Score = 620 bits (1599), Expect = 0.0 Identities = 309/338 (91%), Positives = 323/338 (95%) Query: 1 MKVFYDKDADLSLIKGKNVTIIGYGSQGHAHALNLKDSGVNVTVGLRKSGASWNKAANAG 60 MKVFYDKDADLSLIKGK VTIIGYGSQGHAHALNLK+SGVN+TVGLRK GASW+KA NAG Sbjct: 1 MKVFYDKDADLSLIKGKQVTIIGYGSQGHAHALNLKESGVNITVGLRKGGASWSKAENAG 60 Query: 61 LQVKEVAEAVKGADVVMILLPDEQIADVYKNEVHDNIKEGAALAFAHGFNVHYGAVIPRA 120 LQVKEVAEAVKGADVVM+LLPDEQIA+VY EVH N K+GAALAFAHGFNVHYG VIPRA Sbjct: 61 LQVKEVAEAVKGADVVMMLLPDEQIAEVYAKEVHGNAKQGAALAFAHGFNVHYGQVIPRA 120 Query: 121 DLDVIMIAPKAPGHTVRATYTQGGGVPHLIAVHQNKSGAARDIALSYATANGGGRAGIIE 180 DLDVIMIAPKAPGHTVR TYTQGGGVPHLIAV Q+KSGAARDIALSYA ANGGGRAGIIE Sbjct: 121 DLDVIMIAPKAPGHTVRGTYTQGGGVPHLIAVAQDKSGAARDIALSYAAANGGGRAGIIE 180 Query: 181 TNFREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYE 240 TNFREETETDLFGEQAVLCGGTV+LIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYE Sbjct: 181 TNFREETETDLFGEQAVLCGGTVDLIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYE 240 Query: 241 GGIANMNYSISNNAEYGEYVTGPRVVTEETKKAMKQCLTDIQTGEYAKSFLLENKAGAPT 300 GGIANMNYSISNNAEYGEYVTGPR+VT ETKKAMK LTDIQTGEYAKSF++ENKAGAPT Sbjct: 241 GGIANMNYSISNNAEYGEYVTGPRIVTAETKKAMKAVLTDIQTGEYAKSFIIENKAGAPT 300 Query: 301 LISRRRLTAEHQIEEVGAKLRAMMPWIAKNKMVDQSKN 338 L SRRRLTAEHQIE+VG+KLRAMMPWIAKNK+VDQSKN Sbjct: 301 LQSRRRLTAEHQIEQVGSKLRAMMPWIAKNKLVDQSKN 338 Lambda K H 0.316 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 553 Number of extensions: 16 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 338 Length of database: 338 Length adjustment: 28 Effective length of query: 310 Effective length of database: 310 Effective search space: 96100 Effective search space used: 96100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate H281DRAFT_04553 H281DRAFT_04553 (ketol-acid reductoisomerase)
to HMM TIGR00465 (ilvC: ketol-acid reductoisomerase (EC 1.1.1.86))
../bin/blast/fastacmd -i /tmp/list.29594.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.29594.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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