Align 3-isopropylmalate dehydratase large subunit 1; Alpha-IPM isomerase 1; IPMI 1; Isopropylmalate isomerase 1; EC 4.2.1.33 (characterized)
to candidate H281DRAFT_02541 H281DRAFT_02541 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33)
Query= SwissProt::P15717 (466 letters) >FitnessBrowser__Burk376:H281DRAFT_02541 Length = 465 Score = 476 bits (1224), Expect = e-139 Identities = 238/466 (51%), Positives = 310/466 (66%), Gaps = 6/466 (1%) Query: 1 MAKTLYEKLFDAHVVFEAPNETPLLYIDRHLVHEVTSPQAFDGLRAHHRPVRQPGKTFAT 60 MA+TL+++++DAHVV + LL IDRHL+H+++ P F+ L A PV +P +FAT Sbjct: 1 MAQTLFDRIWDAHVVTDLGGGWALLAIDRHLLHDLSGPGGFETLAARELPVSRPDLSFAT 60 Query: 61 MDHNVST---QTKDINASGEMARIQMQELIKNCNEFGVELYDLNHPYQGIVHVMGPEQGV 117 DH VS+ +T + N +G ++ C+ V YDL QGIVHVM PE G+ Sbjct: 61 ADHAVSSAPHRTGETNPAGAKLYASLRRF---CDSASVPFYDLGKAGQGIVHVMAPEMGL 117 Query: 118 TLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVTGNAAPG 177 TLPG TIVCGDSHT THG GALAFGIG+SE+ HVLATQT++Q + + M+I TG A G Sbjct: 118 TLPGTTIVCGDSHTCTHGGLGALAFGIGSSELAHVLATQTVRQKKPRQMRITYTGVLAKG 177 Query: 178 ITAKDIVLAIIGKTGSAGGTGHVVEFCGDAIRALSMEGRMTLCNMAIEMGAKAGLVAPDE 237 + AKD+ L +I K G + G G+ +E CG A++ LS+E R+TLCNM++E+G+K PD+ Sbjct: 178 VFAKDLALHVIAKLGCSAGVGYAIEHCGPALKRLSVEERLTLCNMSVELGSKIAFCPPDD 237 Query: 238 TTFNYVKGRLHAPKGRDFDEAVEYWKTLKTDDGATFDTVVALRAEEIAPQVTWGTNPGQV 297 TF++++G +AP G +F+ AV W+ L++DD A FD V++ ++ P VTWGT P Sbjct: 238 VTFDFLRGLPYAPAGDEFEHAVSEWRKLRSDDNAHFDVEVSIDLSDVEPMVTWGTTPEHA 297 Query: 298 ISVTDIIPDPASFSDPVERASAEKALAYMGLQPGVPLTDVAIDKVFIGSCTNSRIEDLRA 357 ++VT +PDP +D R E AL YMGL G L ++D VFIGSC NSRI DLR Sbjct: 298 LAVTSAVPDPTDSTDAERRKGVEAALEYMGLCGGQSLAGTSVDWVFIGSCANSRISDLRE 357 Query: 358 AAEVAKGRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDR 417 AA + +G+ VAP VQA VVPGS VK AEAEGL +F AGFEWR PGCSMC+A N D Sbjct: 358 AASIVRGKHVAPNVQAWVVPGSQLVKEIAEAEGLADVFRSAGFEWREPGCSMCVAANGDV 417 Query: 418 LNPGERCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIR 463 + PG+R STSNRNF GRQG G RTHL SPA AAAAA+ G D R Sbjct: 418 VPPGQRIVSTSNRNFIGRQGPGARTHLASPATAAAAAIAGAIVDPR 463 Lambda K H 0.318 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 672 Number of extensions: 30 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 466 Length of database: 465 Length adjustment: 33 Effective length of query: 433 Effective length of database: 432 Effective search space: 187056 Effective search space used: 187056 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate H281DRAFT_02541 H281DRAFT_02541 (3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))
../bin/blast/fastacmd -i /tmp/list.20884.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20884.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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