Align dihydroxyacid dehydratase (characterized)
to candidate H281DRAFT_05312 H281DRAFT_05312 dihydroxyacid dehydratase
Query= CharProtDB::CH_024768 (616 letters) >FitnessBrowser__Burk376:H281DRAFT_05312 Length = 619 Score = 905 bits (2339), Expect = 0.0 Identities = 460/621 (74%), Positives = 525/621 (84%), Gaps = 11/621 (1%) Query: 1 MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFTQFVPGHVHLRDLGKLV 60 MP YRS T+T GRNMAGAR+LWRATGM D DF KPIIAVVNSFTQFVPGHVHL+DLG+LV Sbjct: 1 MPAYRSKTSTAGRNMAGARSLWRATGMKDEDFSKPIIAVVNSFTQFVPGHVHLKDLGQLV 60 Query: 61 AEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCIS 120 A +IEAAGGVAKEFNTIAVDDGIAMGH GMLYSLPSR++IADSVEYMVNAHCADAMVCIS Sbjct: 61 AREIEAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRDIIADSVEYMVNAHCADAMVCIS 120 Query: 121 NCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSD------QIIKLDLVDAMIQGADP 174 NCDKITPGMLMA++RLNIPVIFVSGGPMEAGKT+L++ + KLDLVDAM+ AD Sbjct: 121 NCDKITPGMLMAAMRLNIPVIFVSGGPMEAGKTRLANPKTGTIEFKKLDLVDAMVIAADK 180 Query: 175 KVSDSQSDQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGNGSLLATHADRKQLFLN 234 SD+ +VERSACPTCGSCSGMFTANSMNCLTEALGLS PGNG+++ATHADR+QLF Sbjct: 181 AYSDADVAEVERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGTVVATHADREQLFKR 240 Query: 235 AGKRIVELTKRYYEQNDESALPRNIASKAAFENAMTLDIAMGGSTNTVLHLLAAAQEAEI 294 AG+RIVEL ++YYEQ + S LPR + KA FENAMTLDIAMGGSTNT+LHLLA A+EAEI Sbjct: 241 AGRRIVELARQYYEQEEASVLPRAVGFKA-FENAMTLDIAMGGSTNTILHLLAIAREAEI 299 Query: 295 DFTMSDIDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVIGILGELDRAGLLNRDVKNVLG 354 DFTM+DID+LSR VPQLCKVAP+T KYH+EDVHRAGG++ ILGELDRAG L DV V Sbjct: 300 DFTMTDIDRLSRIVPQLCKVAPNTNKYHIEDVHRAGGIMAILGELDRAGKLQTDVPTVHA 359 Query: 355 LTLPQTLEQYDVMLTQDDAVKNMFRAGPAGIRTTQAFSQDCRWDTLDDDRANGCIRSLEH 414 TL L+Q+D++ T D+AV+ + AGPAG+ T AFSQ+ RW +LD DRA GCIRS EH Sbjct: 360 PTLKDALDQWDIVRTGDEAVRTFYMAGPAGVPTQVAFSQNTRWPSLDLDRAEGCIRSYEH 419 Query: 415 AYSKDGGLAVLYGNFAENGCIVKTAGVDDSILKFTGPAKVYESQDDAVEAILGGKVVAGD 474 A+SK+GGLAVL GN A +GC+VKTAGVD+SIL F G A V ESQD+AVE IL GKV AGD Sbjct: 420 AFSKEGGLAVLTGNIALDGCVVKTAGVDESILVFEGTAHVTESQDEAVENILAGKVKAGD 479 Query: 475 VVVIRYEGPKGGPGMQEMLYPTSFLKSMGLGKACALITDGRFSGGTSGLSIGHVSPEAAS 534 VV++RYEGPKGGPGMQEMLYPTS++KS GLGKACAL+TDGRFSGGTSGLSIGH SPEAA+ Sbjct: 480 VVIVRYEGPKGGPGMQEMLYPTSYIKSQGLGKACALLTDGRFSGGTSGLSIGHCSPEAAA 539 Query: 535 GGSIGLIEDGDLIAIDIPNRGIQLQVSDAELAARREAQDARGDKAWTP-KNRERQVSFAL 593 GG+IGL+ DGD I IDIPNR I + +SDAELA+RR+ Q+A+G W P K R R+VS AL Sbjct: 540 GGAIGLVRDGDKIRIDIPNRTINVLLSDAELASRRDEQNAKG---WKPAKPRPRKVSAAL 596 Query: 594 RAYASLATSADKGAVRDKSKL 614 +AYA L SADKGAVRD S L Sbjct: 597 KAYAKLVMSADKGAVRDLSLL 617 Lambda K H 0.317 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1212 Number of extensions: 41 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 616 Length of database: 619 Length adjustment: 37 Effective length of query: 579 Effective length of database: 582 Effective search space: 336978 Effective search space used: 336978 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)
Align candidate H281DRAFT_05312 H281DRAFT_05312 (dihydroxyacid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.976.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.976.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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