Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate H281DRAFT_04193 H281DRAFT_04193 branched chain amino acid aminotransferase apoenzyme
Query= reanno::BFirm:BPHYT_RS16285 (307 letters) >FitnessBrowser__Burk376:H281DRAFT_04193 Length = 307 Score = 610 bits (1574), Expect = e-179 Identities = 301/307 (98%), Positives = 304/307 (99%) Query: 1 MSMADRDGKIWMDGKLIDWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLQEHT 60 MSMADRDGKIWMDGKLIDWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLQEHT Sbjct: 1 MSMADRDGKIWMDGKLIDWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLQEHT 60 Query: 61 KRLLNSAKIFQMDVPFDHETLAAAQCEVVRENKLESCYLRPIIWVGSEKLGVSAKGNTIH 120 KRLLNSAKIFQMDVPFDHETLAAAQ EVVRENKLESCYLRPIIWVGSEKLGVSAKGNTIH Sbjct: 61 KRLLNSAKIFQMDVPFDHETLAAAQREVVRENKLESCYLRPIIWVGSEKLGVSAKGNTIH 120 Query: 121 VAIAAWPWGAYLGEDGIAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEAIADG 180 VAIAAWPWGAYLGEDGIAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEAIADG Sbjct: 121 VAIAAWPWGAYLGEDGIAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEAIADG 180 Query: 181 YDEALLLDVDGYVSEGSGENFFLVNNGKLYTPDLSSCLDGITRDTVITLARDAGIQVIEK 240 YDEALLLDVDGYVSEGSGENFFLVNNGKLYTPDLSSCLDGITRDTVITLARD GI VIEK Sbjct: 181 YDEALLLDVDGYVSEGSGENFFLVNNGKLYTPDLSSCLDGITRDTVITLARDMGIPVIEK 240 Query: 241 RITRDEVYTCDEAFFTGTAAEVTPIRELDNRTIGSGARGPITEKLQSGFFDIVNGKSDKY 300 RITRDEVYTCDEAFFTGTAAEVTPIRELDNRTIG+GARGPITEKLQSGFFDIVNGKS+KY Sbjct: 241 RITRDEVYTCDEAFFTGTAAEVTPIRELDNRTIGAGARGPITEKLQSGFFDIVNGKSEKY 300 Query: 301 ANWLTKI 307 A+WLTKI Sbjct: 301 AHWLTKI 307 Lambda K H 0.319 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 539 Number of extensions: 5 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 307 Length of database: 307 Length adjustment: 27 Effective length of query: 280 Effective length of database: 280 Effective search space: 78400 Effective search space used: 78400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate H281DRAFT_04193 H281DRAFT_04193 (branched chain amino acid aminotransferase apoenzyme)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))
../bin/blast/fastacmd -i /tmp/list.6152.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.6152.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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