Align 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) (characterized)
to candidate H281DRAFT_00509 H281DRAFT_00509 dihydrodipicolinate synthase
Query= BRENDA::Q9I4W3 (292 letters) >FitnessBrowser__Burk376:H281DRAFT_00509 Length = 308 Score = 344 bits (882), Expect = 2e-99 Identities = 173/290 (59%), Positives = 215/290 (74%) Query: 2 IAGSMVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIR 61 I GS+ A++TP G LD + KL+D+H+ EGTNA+V VGT+GESATL VEEH+ +++ Sbjct: 18 IRGSIPAIITPMLEDGSLDLPAFRKLIDWHVAEGTNALVVVGTSGESATLSVEEHVLMVK 77 Query: 62 RVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRH 121 V+ GRIPVIAG+G NST EA+ LT AK GADA L V PYYNKPTQEG+Y+HF Sbjct: 78 TAVEHTAGRIPVIAGSGGNSTAEAIELTRQAKEVGADATLQVVPYYNKPTQEGIYRHFAK 137 Query: 122 IAEAVAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIKEATGDLQRAKEVIERVGKDF 181 IAE V +P ILYNVPGRT DM ET+ R ++VP IIG+KEATG++ RA +I+ F Sbjct: 138 IAETVDLPVILYNVPGRTVADMSNETILRCAQVPGIIGVKEATGNIDRAAHLIKSAPAHF 197 Query: 182 LVYSGDDATAVELMLLGGKGNISVTANVAPRAMSDLCAAAMRGDAAAARAINDRLMPLHK 241 +YSGDD TA+ LMLLGG GNISVTANVAPRAMS+LC AA+ DA AR I+ +L+ LHK Sbjct: 198 GIYSGDDPTAIALMLLGGHGNISVTANVAPRAMSELCKAALAADAKTAREIHLKLLSLHK 257 Query: 242 ALFIESNPIPVKWALHEMGLIPEGIRLPLTWLSPRCHEPLRQAMRQTGVL 291 LFIESNPIP KWAL ++G + GIRLPLT L + HE +R A+R+ G+L Sbjct: 258 NLFIESNPIPAKWALQQLGRVQGGIRLPLTPLDAQYHEVVRGALREAGLL 307 Lambda K H 0.319 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 302 Number of extensions: 7 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 292 Length of database: 308 Length adjustment: 27 Effective length of query: 265 Effective length of database: 281 Effective search space: 74465 Effective search space used: 74465 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate H281DRAFT_00509 H281DRAFT_00509 (dihydrodipicolinate synthase)
to HMM TIGR00674 (dapA: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7))
../bin/blast/fastacmd -i /tmp/list.25371.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.25371.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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