Align phosphoserine aminotransferase; EC 2.6.1.52 (characterized)
to candidate H281DRAFT_03926 H281DRAFT_03926 phosphoserine aminotransferase apoenzyme
Query= CharProtDB::CH_002572 (362 letters) >FitnessBrowser__Burk376:H281DRAFT_03926 Length = 360 Score = 399 bits (1026), Expect = e-116 Identities = 195/358 (54%), Positives = 264/358 (73%), Gaps = 1/358 (0%) Query: 3 QIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLN 62 ++FNFS+GPA +P EVL+QA E+ DW G G SVME+SHRGKEF+ + EEA D R+LL Sbjct: 2 RVFNFSAGPAAMPEEVLRQAADEMLDWQGSGMSVMEMSHRGKEFMSIHEEALLDLRELLA 61 Query: 63 VPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAK 122 VP+++++LF GGG G+ A VP+N+LG K AD+V G W+ ++KEA+KY T +V + Sbjct: 62 VPASHRILFLQGGGLGENAIVPMNLLGWKPRADFVVTGSWSQKSLKEAQKYGTVHVAASG 121 Query: 123 VTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFGADVVVAADFSSTILSR 182 T DG EWQ+SD+ AY+H C NETI G+ E PD G +V + AD SS ILSR Sbjct: 122 ETADGFTRAPAFSEWQMSDDPAYVHLCTNETIHGVETFEIPDLG-NVPLVADASSHILSR 180 Query: 183 PIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPP 242 P+D+++YGV++ GAQKNIG AG+T+VIVRED+L +A CPS ++ + +N SM+NTPP Sbjct: 181 PMDIAKYGVLFGGAQKNIGMAGVTVVIVREDMLDRAQAICPSAFEWKTVAENNSMYNTPP 240 Query: 243 TFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKANRSRMNVPF 302 T+A Y++GLVFKWLK GG+A ++ N +K++LLY ID+S FY N V +++RSRMNVPF Sbjct: 241 TYAIYIAGLVFKWLKKQGGLAAIEARNLEKSKLLYDTIDSSSFYLNKVERSSRSRMNVPF 300 Query: 303 QLADSALDKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFERR 360 LAD + ++ FL + A G+ LKGH+ VGGMRASIYNA+PLEGVKAL ++M EFE+R Sbjct: 301 FLADESRNEEFLAGAKARGMVQLKGHKSVGGMRASIYNAVPLEGVKALVEYMKEFEQR 358 Lambda K H 0.319 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 385 Number of extensions: 8 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 362 Length of database: 360 Length adjustment: 29 Effective length of query: 333 Effective length of database: 331 Effective search space: 110223 Effective search space used: 110223 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate H281DRAFT_03926 H281DRAFT_03926 (phosphoserine aminotransferase apoenzyme)
to HMM TIGR01364 (serC: phosphoserine transaminase (EC 2.6.1.52))
../bin/blast/fastacmd -i /tmp/list.5892.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5892.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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