Align methionine synthase (EC 2.1.1.13) (characterized)
to candidate H281DRAFT_02076 H281DRAFT_02076 methionine synthase (B12-dependent)
Query= BRENDA::P13009 (1227 letters) >FitnessBrowser__Burk376:H281DRAFT_02076 Length = 900 Score = 1064 bits (2752), Expect = 0.0 Identities = 560/904 (61%), Positives = 664/904 (73%), Gaps = 27/904 (2%) Query: 341 RLSGLEPLNIGEDSLFVNVGERTNVTGSAKFKRLIKEEKYSEALDVARQQVENGAQIIDI 400 RL+GLEP N+ +LF+NVGERTNVTGS F R+I +++ EA+ VARQQVENGAQ+ID+ Sbjct: 2 RLAGLEPFNVTSGTLFINVGERTNVTGSKAFARMILNDQFDEAIAVARQQVENGAQVIDV 61 Query: 401 NMDEGMLDAEAAMVRFLNLIAGEPDIARVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMK 460 NMDE MLD++AAMVRF+NLIA EPDIARVPIMIDSSKW+VIE GLKC+QGK IVNSIS+K Sbjct: 62 NMDEAMLDSKAAMVRFMNLIASEPDIARVPIMIDSSKWEVIEAGLKCVQGKAIVNSISLK 121 Query: 461 EGVDAFIHHAKLLRRYGAAVVVMAFDEQGQADTRARKIEICRRAYKILTEEVGFPPEDII 520 EG +AF HHA L+RRYGAA VVMAFDEQGQADT RK +IC+R+Y L EVGFPPEDII Sbjct: 122 EGEEAFRHHANLIRRYGAAAVVMAFDEQGQADTFERKTQICKRSYDFLVNEVGFPPEDII 181 Query: 521 FDPNIFAVATGIEEHNNYAQDFIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIH 580 FDPNIFA+ATGIEEHNNYA DFI A IK LP+A +SGGVSNVSFSFRGNDPVREAIH Sbjct: 182 FDPNIFAIATGIEEHNNYAVDFINATRWIKENLPYAKVSGGVSNVSFSFRGNDPVREAIH 241 Query: 581 AVFLYYAIRNGMDMGIVNAGQLAIYDDLPAELRDAVEDVILNRRDDGTERLLELAEKYRG 640 VFLY+AI+ GMDMGIVNAGQL +Y DL ELR+ VEDV+LNRR DGT+RLLE+A+K+ Sbjct: 242 TVFLYHAIQAGMDMGIVNAGQLGVYADLDPELRERVEDVVLNRRPDGTDRLLEIADKF-- 299 Query: 641 SKTDDTANAQQAEWRSWEVNKRLEYSLVKGITEFIEQDTEEARQQAT----RPIEVIEGP 696 KT + EWR+ V KRL ++LV GIT FI +DTEE R + RPI VIEGP Sbjct: 300 -KTGAAKKEENLEWRNQPVEKRLSHALVHGITNFIVEDTEEVRAKIAAAGGRPINVIEGP 358 Query: 697 LMDGMNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFIEASKEQ-------GKTNGKM 749 LMDGMN+VGDLFG+GKMFLPQVVKSARVMKQAVA+L PFIE K+Q + GK+ Sbjct: 359 LMDGMNIVGDLFGQGKMFLPQVVKSARVMKQAVAHLIPFIEEEKKQLAAAGGDVRAKGKI 418 Query: 750 VIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITP 809 VIATVKGDVHDIGKNIV VVLQCNN+E+V++GVMVP IL AK AD+IGLSGLITP Sbjct: 419 VIATVKGDVHDIGKNIVSVVLQCNNFEVVNMGVMVPCNDILAKAKVEGADIIGLSGLITP 478 Query: 810 SLDEMVNVAKEMERQGF----TIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNASRTVG 865 SL+EM VA EM+R + IPLLIGGATTS+ HTAVKI +Y GP VYV +ASR+V Sbjct: 479 SLEEMAYVASEMQRDDYFRVKKIPLLIGGATTSRVHTAVKIAPHYEGPVVYVPDASRSVS 538 Query: 866 VVAALLSDTQRDDFVARTRKEYETVRIQHGRKKPRTPPVTLEAARDNDFAFDWQAYTPPV 925 V ++LLSD ++ + +YE +R QH KK P VTL AR N DW+ Y P Sbjct: 539 VASSLLSDEGATKYLDELKSDYERIRNQHANKK-ALPMVTLAEARANKTPIDWKGYQPVK 597 Query: 926 AHRLGVQEVE-ASIETLRNYIDWTPFFMTWSLAGKYPRILEDEVVGVEAQRLFKDANDML 984 +G + + + L NYIDW PFF TW LAG YP IL DE+VG A+R+F D ML Sbjct: 598 PKFIGRRVFKNFDLNELANYIDWGPFFQTWDLAGPYPAILNDEIVGESARRVFSDGKSML 657 Query: 985 DKLSAEKTLNPRGVVGLFPANRVG-DDIEIYRDETRTHVINVSHHLRQQTEKTGF----- 1038 +L + L GV+ L PAN V DDIEIY DE+RT V +LRQQ+ + Sbjct: 658 ARLIQGRWLQANGVIALLPANTVNDDDIEIYTDESRTEVALTWRNLRQQSVRPVVDGVMR 717 Query: 1039 ANYCLADFVAPKLSGKADYIGAFAVTGGLEEDALADAFEAQHDDYNKIMVKALADRLAEA 1098 N LADF+APK SG ADYIG FAVT GL D FE HDDY+ IM+KALADR AEA Sbjct: 718 PNRSLADFIAPKDSGVADYIGMFAVTAGLGVDVKEKQFEKDHDDYSAIMLKALADRFAEA 777 Query: 1099 FAEYLHERVRKVYWGYAPNENLSNEELIRENYQGIRPAPGYPACPEHTEKATIWELLEVE 1158 FAE LH RVR+ WGYA ENLS+++LI E Y+GIRPAPGYPACP+H K ++E+L+ Sbjct: 778 FAEALHARVRRDLWGYANTENLSSDDLIAEKYRGIRPAPGYPACPDHLVKRDMFEVLQA- 836 Query: 1159 KHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQVEDYARRKGMSVTEVERWL 1218 GM +TES AM P ASVSG+Y +HPDS Y++V +I +DQ+EDYA+R +S + ER L Sbjct: 837 GDIGMSVTESLAMLPAASVSGFYLAHPDSTYFSVGKIGQDQLEDYAQRMSLSKADAERAL 896 Query: 1219 APNL 1222 AP L Sbjct: 897 APLL 900 Lambda K H 0.318 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 2593 Number of extensions: 110 Number of successful extensions: 10 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 1227 Length of database: 900 Length adjustment: 45 Effective length of query: 1182 Effective length of database: 855 Effective search space: 1010610 Effective search space used: 1010610 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.9 bits)
Align methionine synthase (EC 2.1.1.13) (characterized)
to candidate H281DRAFT_02075 H281DRAFT_02075 methionine synthase (B12-dependent)
Query= BRENDA::P13009 (1227 letters) >FitnessBrowser__Burk376:H281DRAFT_02075 Length = 356 Score = 405 bits (1041), Expect = e-117 Identities = 203/330 (61%), Positives = 259/330 (78%), Gaps = 6/330 (1%) Query: 8 LRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFADWPCDLKGNNDLLVLSKPEVIAAI 67 L A L RIL+LDG MGTMIQ Y+L+EA +RGERF D+ D+KGNN+LL +++P++I+ I Sbjct: 23 LPALLKSRILILDGAMGTMIQRYKLDEARYRGERFKDYGRDIKGNNELLSITQPQIISEI 82 Query: 68 HNAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINFAAAKLARACADEWTARTPEKPR 127 H Y AGADIIETNTF +TT+A ADY ME+L+ E+N +AKLARA D+++ TP+KPR Sbjct: 83 HEQYLAAGADIIETNTFGATTVAQADYGMEALAVEMNLQSAKLARAACDKYS--TPDKPR 140 Query: 128 YVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYRESTKALVEGGADLILIETVFDTL 187 +VAG +GPT +TASISPDVNDP RN+TFD L AAY E KAL+EGGADL L+ET+FDTL Sbjct: 141 FVAGAIGPTPKTASISPDVNDPGARNVTFDELRAAYYEQAKALLEGGADLFLVETIFDTL 200 Query: 188 NAKAAVFAVKTEFEALGVELPIMISGTITDASGRTLSGQTTEAFYNSLRHAEALTFGLNC 247 NAKAA+FA+ FE G LPIMISGT+TDASGR LSGQT EAF+NSLRHA+ LTFGLNC Sbjct: 201 NAKAALFALDELFENTGERLPIMISGTVTDASGRILSGQTVEAFWNSLRHAKPLTFGLNC 260 Query: 248 ALGPDELRQYVQELSRIAECYVTAHPNAGLPNAF---GEYDLDADTMAKQIREWAQAGFL 304 ALG +R Y+ EL+++ + YV+ +PNAGLPN G +L ADT + ++E+A+AG + Sbjct: 261 ALGAALMRPYIAELAKLCDTYVSCYPNAGLPNPMSDTGFDELPADT-SGLLKEFAEAGLV 319 Query: 305 NIVGGCCGTTPQHIAAMSRAVEGLAPRKLP 334 NI GGCCGTTP+HIAA+++A+ + PRK P Sbjct: 320 NIAGGCCGTTPEHIAAIAKALAEVKPRKWP 349 Lambda K H 0.318 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1014 Number of extensions: 34 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 1227 Length of database: 356 Length adjustment: 38 Effective length of query: 1189 Effective length of database: 318 Effective search space: 378102 Effective search space used: 378102 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 54 (25.4 bits)
Align candidate H281DRAFT_02076 H281DRAFT_02076 (methionine synthase (B12-dependent))
to HMM TIGR02082 (metH: methionine synthase (EC 2.1.1.13))
../bin/blast/fastacmd -i /tmp/list.26197.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.26197.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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