GapMind for Amino acid biosynthesis

 

Alignments for a candidate for metX in Paraburkholderia bryophila 376MFSha3.1

Align Homoserine O-acetyltransferase; HAT; Homoserine transacetylase; HTA; EC 2.3.1.31 (characterized)
to candidate H281DRAFT_02214 H281DRAFT_02214 homoserine O-acetyltransferase

Query= SwissProt::Q12XS2
         (488 letters)



>FitnessBrowser__Burk376:H281DRAFT_02214
          Length = 381

 Score =  358 bits (920), Expect = e-103
 Identities = 179/369 (48%), Positives = 243/369 (65%), Gaps = 7/369 (1%)

Query: 5   SVGIVATNYHTIEGEFQLEGGHTLKNIRLAYETYGNLNKEKSNAILVCHALTGDAHAAGR 64
           S+GIVA          +L+ G +L +  L  ETYG LN  +SNA+LVCHAL    H AG 
Sbjct: 3   SIGIVAPQKMHFTEPLRLQNGSSLASYDLMVETYGTLNAARSNAVLVCHALNASHHVAGV 62

Query: 65  HSDDDKKPGWWDDIIGPGKALDTDRYFVLCSNVLGGCKGTTGPASLDPDTGRQYGITFPV 124
           ++D+ K  GWWD+++GPGK LDT+++FV+  N LG C G+TGP S+DP TG  YG TFPV
Sbjct: 63  YADNLKDIGWWDNMVGPGKPLDTNKFFVIGVNNLGSCFGSTGPMSIDPATGNPYGATFPV 122

Query: 125 ITIRDMVNVQKRLIDHMGITTLFAVVGGSMGGMQTLQWCVAYPELVKKAVVIASTAVSSP 184
           +T+ D VN Q R+ D  GIT   AV+GGS+GGMQ L W + YPE V   +V+AST   S 
Sbjct: 123 VTVEDWVNAQARVADQFGITRFAAVMGGSLGGMQALAWSMMYPERVGHCIVVASTPKLSA 182

Query: 185 QQIAFNEVGRNAIISDPDWNGGDYY-EGEPPVNGLSTARMIAHITYLSDASMHEKFGRRL 243
           Q IAFNEV R+AI+SDPD++GG+YY     P  GL  ARMI HITYLSD  M EKFGR L
Sbjct: 183 QNIAFNEVARSAILSDPDFHGGNYYAHNVKPKRGLRVARMIGHITYLSDDDMAEKFGRSL 242

Query: 244 QQGE----SYKFDMSNDFQVGSYLKYQGDTFTGRFDANSYLYATKAVDYFD--LSMNGSL 297
           ++ E    +Y F+   +F+V SYL+YQGD F   FDAN+YL  T+A+DYFD   +  G L
Sbjct: 243 RRAEGALDAYNFNFDVEFEVESYLRYQGDKFADYFDANTYLLITRALDYFDPAKAFEGDL 302

Query: 298 AEGLKYVQAKMLVISITSDWLYSPYHSKKIVEGLTVKEHDVSYREIESSYGHDAFLLESG 357
              + +  AK L+ S T+DW ++P  S+++V+ L   +  V+Y EI++ +GHDAFLL+  
Sbjct: 303 TAAVAHTTAKYLIASFTTDWRFAPARSRELVKALLDHKRTVTYAEIDAPHGHDAFLLDDA 362

Query: 358 QINYVIHNF 366
           + + ++  +
Sbjct: 363 RYHNLMRAY 371


Lambda     K      H
   0.318    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 531
Number of extensions: 31
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 381
Length adjustment: 32
Effective length of query: 456
Effective length of database: 349
Effective search space:   159144
Effective search space used:   159144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate H281DRAFT_02214 H281DRAFT_02214 (homoserine O-acetyltransferase)
to HMM TIGR01392 (metX: homoserine O-acetyltransferase (EC 2.3.1.31))

Software error:

../bin/blast/fastacmd -i /tmp/list.9245.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9245.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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