GapMind for Amino acid biosynthesis

 

Alignments for a candidate for proB in Paraburkholderia bryophila 376MFSha3.1

Align glutamate 5-kinase (EC 2.7.2.11) (characterized)
to candidate H281DRAFT_06264 H281DRAFT_06264 glutamate 5-kinase

Query= BRENDA::P0A7B5
         (367 letters)



>FitnessBrowser__Burk376:H281DRAFT_06264
          Length = 372

 Score =  290 bits (741), Expect = 6e-83
 Identities = 160/366 (43%), Positives = 224/366 (61%), Gaps = 1/366 (0%)

Query: 1   MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHL 60
           ++DS+ LVVK+G+S++T   R L+ A I     Q A L A    +V+V+SGAIA G + L
Sbjct: 5   IADSRRLVVKVGSSLVTNDGRGLDHAAIGRWAAQIAALRAQSKEVVLVSSGAIAEGMQRL 64

Query: 61  GYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDT 120
           G+ + P  I   Q  AAVGQ  L Q++E  F+ + I   Q+LLT AD+ DRER+LNAR T
Sbjct: 65  GWSKRPREIDELQAAAAVGQMGLAQVYESRFAEHSIQTAQILLTHADLADRERYLNARST 124

Query: 121 LRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPR 180
           L  LL   +VP+INEND V T EIK GDND L AL A L   D L++LTDQ+GL+TADPR
Sbjct: 125 LLTLLRLGVVPIINENDTVVTDEIKFGDNDTLGALVANLIEGDALIILTDQQGLFTADPR 184

Query: 181 SNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPG 240
            +P A L++        L A+AG + S LG GGM TK+ AA  A  +G +T+IA+G +  
Sbjct: 185 KDPNATLVQQADAGAPDLEAMAGGAGSSLGRGGMLTKILAAKRAAHSGANTVIASGREAD 244

Query: 241 VIGDVMEGISVGTLFHAQATPLENRKRWIFG-APPAGEITVDEGATAAILERGSSLLPKG 299
           V+  +  G ++GT   A+   +  RK+W+       G + +D+GA   +   G SLLP G
Sbjct: 245 VLSRLASGEAIGTQLIARTARMAARKQWMADHLQVRGHVVIDDGAVEKLTAGGKSLLPIG 304

Query: 300 IKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAV 359
           I  V G F+RGEVI   N  GR++A G++ Y+S   + I    S EI+++LGY   P  +
Sbjct: 305 IVGVQGAFARGEVIACLNAAGREVARGLTNYSSAETKLIQRRPSGEIESVLGYMLEPELI 364

Query: 360 HRDDMI 365
           HRD+++
Sbjct: 365 HRDNLV 370


Lambda     K      H
   0.318    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 363
Number of extensions: 8
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 372
Length adjustment: 30
Effective length of query: 337
Effective length of database: 342
Effective search space:   115254
Effective search space used:   115254
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate H281DRAFT_06264 H281DRAFT_06264 (glutamate 5-kinase)
to HMM TIGR01027 (proB: glutamate 5-kinase (EC 2.7.2.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.10941.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10941.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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