Align Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 (characterized)
to candidate H281DRAFT_03925 H281DRAFT_03925 chorismate mutase
Query= SwissProt::P27603 (365 letters) >FitnessBrowser__Burk376:H281DRAFT_03925 Length = 360 Score = 325 bits (833), Expect = 1e-93 Identities = 170/359 (47%), Positives = 242/359 (67%), Gaps = 6/359 (1%) Query: 5 DQLKALRVRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAVFYRPEREAWVLKHI 64 ++LK LR RID+LD +++ L+++RA A EV VK K A +RPERE V+ + Sbjct: 7 NRLKPLRERIDALDAQLIALLNQRAAVALEVGEVK-----KHFNAPVFRPEREQQVIARL 61 Query: 65 MELNKGPLDNEEMARLFREIMSSCLALEQPLRVAYLGPEGTFSQAAALKHFGHSVISKPM 124 ++++GPL +E ++ ++REIM++ ALE+ ++ AYLGP GT+S+ A ++FG S+ P Sbjct: 62 QDMSEGPLASEHISAIWREIMAASRALEKTIKAAYLGPVGTYSEQAMHEYFGQSIEGLPC 121 Query: 125 AAIDEVFREVVAGAVNFGVVPVENSTEGAVNHTLDSFLEHDIVICGEVELRIHHHLLVGE 184 +IDEVFR V AGA FGVVPVENSTEGAV+ TLD L+ + I GE+ L IHH+LL Sbjct: 122 PSIDEVFRSVEAGAAEFGVVPVENSTEGAVSRTLDLLLQTQLAIGGELALPIHHNLLTLN 181 Query: 185 TTKTDRITRIYSHAQSLAQCRKWLDAHYPNVERVAVSSNADAAKRVKSEWNSAAIAGDMA 244 +TR+ +HAQ+LAQC++WL + P++ER AVSSNA+AA+ + AAIAGD A Sbjct: 182 GGLAG-VTRVCAHAQALAQCQRWLATNAPHLERQAVSSNAEAARMAAEDPTVAAIAGDRA 240 Query: 245 AQLYGLSKLAEKIEDRPVNSTRFLIIGSQEVPPTGDDKTSIIVSMRNKPGALHELLMPFH 304 A YGL I+D P N TRF++IG + +G D+TS+IVS+ N+PGA+ +LL P Sbjct: 241 ATHYGLQVAYALIQDDPHNRTRFVMIGKERTGVSGHDQTSLIVSVANEPGAVFKLLEPLA 300 Query: 305 SNGIDLTRIETRPSRSGKWTYVFFIDCMGHHQDPLIKNVLEKIGHEAVALKVLGSYPKA 363 + + +TR E+RP+R G W Y F+ID GH DP + LE++G +A LK+LGSYP+A Sbjct: 301 RHSVSMTRFESRPARVGTWEYYFYIDVEGHRDDPAVAAALEELGQKAAFLKILGSYPRA 359 Lambda K H 0.319 0.133 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 334 Number of extensions: 10 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 365 Length of database: 360 Length adjustment: 29 Effective length of query: 336 Effective length of database: 331 Effective search space: 111216 Effective search space used: 111216 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate H281DRAFT_03925 H281DRAFT_03925 (chorismate mutase)
to HMM TIGR01807 (pheA: chorismate mutase (EC 5.4.99.5))
../bin/blast/fastacmd -i /tmp/list.31944.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31944.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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