Align glutamyl-tRNAGln amidotransferase subunit A (EC 6.3.5.7) (characterized)
to candidate CCNA_02519 CCNA_02519 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A
Query= metacyc::MONOMER-13955 (485 letters) >FitnessBrowser__Caulo:CCNA_02519 Length = 489 Score = 440 bits (1132), Expect = e-128 Identities = 229/415 (55%), Positives = 295/415 (71%), Gaps = 7/415 (1%) Query: 67 EHGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGKLNMDE 126 E G L G P+GVKD T G+RTT SKILENF P Y++TV +L AV +GKLN+D+ Sbjct: 65 EAGPLEGAPLGVKDLFCTNGVRTTACSKILENFVPTYESTVTSQLWRDGAVMLGKLNLDQ 124 Query: 127 FAMGSSTENSAYKLTKNPWNLD-----TVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQ 181 FAMGSS E S + NPW PGGSSGGSAAAVAA + +DTGGSIRQ Sbjct: 125 FAMGSSNETSYFGPVTNPWRAQGSTKALTPGGSSGGSAAAVAADLCLGATATDTGGSIRQ 184 Query: 182 PASFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDSTSA 241 PA+F G VG+KPTYGR SR+G+VAFASSLDQ GPI +TVED A LL ++SG D DSTS Sbjct: 185 PAAFTGTVGIKPTYGRCSRWGVVAFASSLDQAGPIAKTVEDAALLLTSMSGHDPKDSTSL 244 Query: 242 NVDVPDFLSSLTGDIKGLKIAVPKEYLGEGVGKEARESVLAALKVLEGLGATWEEVSLPH 301 ++ VPDF + +KGLKI +PKEY + + E + + L+ G ++SLPH Sbjct: 245 DIPVPDFTQFVGKSVKGLKIGIPKEYRVDNMPAEIEKLWQDGIAWLKEAGCEIVDISLPH 304 Query: 302 SKYALATYYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFGNEVKRRIML 361 +KYAL YY+++ +EAS+NLAR+DG+RYG R + A NL ++Y+ TRA GFG+EVKRRI++ Sbjct: 305 TKYALPAYYIVAPAEASSNLARYDGMRYGLREEGA-NLTEIYENTRASGFGDEVKRRILI 363 Query: 362 GTFALSSGYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIGENTKDPLTM 421 GT+ LS+GYYDAYY KA KVR I +DF++ + + D I+ PT P+ AF +GEN+ DP+ M Sbjct: 364 GTYVLSAGYYDAYYLKALKVRRRIAEDFDNAWTQCDAILTPTAPSAAFGLGENSNDPIAM 423 Query: 422 YANDILTIPVNLAGVPGISVPCGL-ADGLPLGLQIIGKHFDESTVYRVAHAFEQA 475 Y ND+ T+ NLAG+PG+S+P GL A+GLPLGLQIIGK DE+TV+ VA A E+A Sbjct: 424 YLNDVFTVTTNLAGLPGLSLPAGLDANGLPLGLQIIGKPLDEATVFSVAGAVEKA 478 Lambda K H 0.315 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 610 Number of extensions: 25 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 485 Length of database: 489 Length adjustment: 34 Effective length of query: 451 Effective length of database: 455 Effective search space: 205205 Effective search space used: 205205 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.6 bits)
Align candidate CCNA_02519 CCNA_02519 (aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.29453.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.29453.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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