Align Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Asp/Glu-ADT subunit B; EC 6.3.5.- (characterized)
to candidate CCNA_02518 CCNA_02518 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
Query= SwissProt::Q9RF06 (475 letters) >FitnessBrowser__Caulo:CCNA_02518 Length = 498 Score = 425 bits (1092), Expect = e-123 Identities = 221/483 (45%), Positives = 328/483 (67%), Gaps = 15/483 (3%) Query: 3 FETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRA 62 +E V+GLEVH ++ + SK+FS + FGA PN +++D A PG+LPV+N+ V+ A++ Sbjct: 15 WEMVLGLEVHAQVASKSKLFSGAAVGFGAGPNEQVSLVDAAMPGMLPVLNRFCVEQAVKT 74 Query: 63 AMALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEVD-GETKRIGITRL 121 + L +I +S+FDRKNYFYPD P+ YQISQFDQPI G + +E D G T + I RL Sbjct: 75 GLGLRAQINLKSRFDRKNYFYPDLPQGYQISQFDQPIVGEGVVSVERDDGTTFDVRIERL 134 Query: 122 HMEEDAGKSTHKGE--YSLVDLNRQGTPLIEIVSEPDIRSPKEAYAYLEKLRSIIQYTGV 179 H+E+DAGKS H + + VDLNR GT L+EIVS+PD+R+ +EA AY++KLR+I+ Y G Sbjct: 135 HLEQDAGKSLHDQDPNATYVDLNRAGTALMEIVSKPDMRTSEEAAAYVKKLRTILVYLGT 194 Query: 180 SDVKMEEGSLRCDANISL-RPYGQEKF---------GTKAELKNLNSFNYVRKGLEYEEK 229 D ME+G+LR D N+S+ RP EKF GT+ E+KN+NS+ Y+++ +EYE + Sbjct: 195 CDGDMEKGNLRADVNVSVCRPGDYEKFRATGDFKHLGTRCEIKNVNSYRYIQQAIEYEAR 254 Query: 230 RQEEELLSGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVR 289 RQ E L GG++ QETR FD + G+T MR KE + DYRYFP+PD++PL +D AW + + Sbjct: 255 RQIEILEDGGKVDQETRLFDPTKGETRSMRSKEEAHDYRYFPDPDLLPLVLDPAWVKSIE 314 Query: 290 QTIPELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVN 349 +T+PELPD +KA+ ++ GL AYDA VL + + +D+FE+ + G D KL +NW+ + Sbjct: 315 ETLPELPDAKKARLQSQYGLSAYDAGVLIIDADRADYFEAAAK-GRDAKLVANWVTNELL 373 Query: 350 EYLNKNQVELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGNAKQIMEDNGL 409 L+ E ++ L ++A +++LIE+GT+SSKIAK+VF + A G +I+E GL Sbjct: 374 AKLSAAGTEFTNSPLPHTDIAQLVELIENGTISSKIAKEVFEHMWAGEGRPAEIVEKRGL 433 Query: 410 VQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQLVNQLLK 469 VQI+D + K +++ + N E K+ K +A+G+ VGQ+MKA+ G+ANP VN+LL+ Sbjct: 434 VQINDTGAIEKAIDDLIAGNPDKAEAVKD-KPQALGWFVGQVMKATGGKANPGTVNELLR 492 Query: 470 QEL 472 ++L Sbjct: 493 KKL 495 Lambda K H 0.313 0.133 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 646 Number of extensions: 32 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 475 Length of database: 498 Length adjustment: 34 Effective length of query: 441 Effective length of database: 464 Effective search space: 204624 Effective search space used: 204624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 52 (24.6 bits)
Align candidate CCNA_02518 CCNA_02518 (aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B)
to HMM TIGR00133 (gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.2633.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.2633.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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