GapMind for Amino acid biosynthesis

 

Alignments for a candidate for fbp in Caulobacter crescentus NA1000

Align Fructose-bisphosphate aldolase; FBP aldolase; FBPA; Fructose-1,6-bisphosphate aldolase; EC 4.1.2.13 (characterized)
to candidate CCNA_03360 CCNA_03360 tagatose-1,6-bisphosphate aldolase

Query= SwissProt::Q8YNK2
         (359 letters)



>FitnessBrowser__Caulo:CCNA_03360
          Length = 363

 Score =  491 bits (1264), Expect = e-143
 Identities = 241/357 (67%), Positives = 294/357 (82%)

Query: 1   MALVPLRLLLDHAAENGYGIPAFNVNNLEQIQAILKAAAETDSPVILQASRGARNYAGEN 60
           MA + LR LLDHAAE+ YG+PAFN+NN+EQ  AI++AA   +SPVI+QASRGARNYA + 
Sbjct: 1   MARITLRQLLDHAAEHEYGLPAFNINNMEQGLAIMEAADAVNSPVIIQASRGARNYANDI 60

Query: 61  FLRHLILAAVETYPEIPIVMHQDHGNAPSTCYSAIKNNFTSVMMDGSLEADAKTPASFEY 120
            L  +I A V+ YP IP+ MHQDHGN P+TC +AI+  FTSVMMDGSL  DAKTPAS+EY
Sbjct: 61  MLAKMIDALVDIYPHIPVCMHQDHGNGPATCATAIQYGFTSVMMDGSLMEDAKTPASYEY 120

Query: 121 NVNVTREVVNVAHALGVSVEGELGCLGSLETGAGEAEDGHGFEGTLDHSQLLTDPDEAVN 180
           NV VTR+VV +AH+ GVSVEGELG LGSLETG GEAEDGHGFEG L H +LLTDPD+AV+
Sbjct: 121 NVEVTRKVVQMAHSCGVSVEGELGVLGSLETGMGEAEDGHGFEGKLSHDELLTDPDQAVD 180

Query: 181 FVEATQVDALAVAIGTSHGAYKFTRKPTGEILAISRIEEIHRRLPNTHLVMHGSSSVPED 240
           FV  T VDALA+A+GTSHGAYKFTRKP G++LA++ IEEIHRRLPNTHLVMHGSSSVP+D
Sbjct: 181 FVAQTGVDALAIAMGTSHGAYKFTRKPDGDVLAMNVIEEIHRRLPNTHLVMHGSSSVPQD 240

Query: 241 LIALINEYGGAIPETYGVPVEEIQKGIKSGVRKVNIDTDNRLAITAAVREALAKNPKEFD 300
           L  +IN+YGG +P+T+GVPVEEIQ+GIK GVRK+N+DTDNR+AIT A+R+ L + P EFD
Sbjct: 241 LQDIINQYGGEMPQTWGVPVEEIQRGIKHGVRKINVDTDNRMAITGAIRKLLVEKPGEFD 300

Query: 301 PRHFLKPSITYMQKVCAERYVQFGTAGNASKIKQVSLETFAAKYAKGELNAISKAAA 357
           PR +LKP+   M+KVC  R+V+FG+AG+A KIK +S  T A +YA GEL+A   A+A
Sbjct: 301 PRAYLKPAKEAMRKVCQARFVEFGSAGHADKIKPMSTATMAKRYASGELHAKFGASA 357


Lambda     K      H
   0.315    0.132    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 488
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 363
Length adjustment: 29
Effective length of query: 330
Effective length of database: 334
Effective search space:   110220
Effective search space used:   110220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate CCNA_03360 CCNA_03360 (tagatose-1,6-bisphosphate aldolase)
to HMM TIGR01521 (fba: fructose-bisphosphate aldolase, class II, Calvin cycle subtype (EC 4.1.2.13))

Software error:

../bin/blast/fastacmd -i /tmp/list.11232.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11232.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.