Align Fructose-bisphosphate aldolase; FBP aldolase; FBPA; Fructose-1,6-bisphosphate aldolase; EC 4.1.2.13 (characterized)
to candidate CCNA_03360 CCNA_03360 tagatose-1,6-bisphosphate aldolase
Query= SwissProt::Q8YNK2 (359 letters) >FitnessBrowser__Caulo:CCNA_03360 Length = 363 Score = 491 bits (1264), Expect = e-143 Identities = 241/357 (67%), Positives = 294/357 (82%) Query: 1 MALVPLRLLLDHAAENGYGIPAFNVNNLEQIQAILKAAAETDSPVILQASRGARNYAGEN 60 MA + LR LLDHAAE+ YG+PAFN+NN+EQ AI++AA +SPVI+QASRGARNYA + Sbjct: 1 MARITLRQLLDHAAEHEYGLPAFNINNMEQGLAIMEAADAVNSPVIIQASRGARNYANDI 60 Query: 61 FLRHLILAAVETYPEIPIVMHQDHGNAPSTCYSAIKNNFTSVMMDGSLEADAKTPASFEY 120 L +I A V+ YP IP+ MHQDHGN P+TC +AI+ FTSVMMDGSL DAKTPAS+EY Sbjct: 61 MLAKMIDALVDIYPHIPVCMHQDHGNGPATCATAIQYGFTSVMMDGSLMEDAKTPASYEY 120 Query: 121 NVNVTREVVNVAHALGVSVEGELGCLGSLETGAGEAEDGHGFEGTLDHSQLLTDPDEAVN 180 NV VTR+VV +AH+ GVSVEGELG LGSLETG GEAEDGHGFEG L H +LLTDPD+AV+ Sbjct: 121 NVEVTRKVVQMAHSCGVSVEGELGVLGSLETGMGEAEDGHGFEGKLSHDELLTDPDQAVD 180 Query: 181 FVEATQVDALAVAIGTSHGAYKFTRKPTGEILAISRIEEIHRRLPNTHLVMHGSSSVPED 240 FV T VDALA+A+GTSHGAYKFTRKP G++LA++ IEEIHRRLPNTHLVMHGSSSVP+D Sbjct: 181 FVAQTGVDALAIAMGTSHGAYKFTRKPDGDVLAMNVIEEIHRRLPNTHLVMHGSSSVPQD 240 Query: 241 LIALINEYGGAIPETYGVPVEEIQKGIKSGVRKVNIDTDNRLAITAAVREALAKNPKEFD 300 L +IN+YGG +P+T+GVPVEEIQ+GIK GVRK+N+DTDNR+AIT A+R+ L + P EFD Sbjct: 241 LQDIINQYGGEMPQTWGVPVEEIQRGIKHGVRKINVDTDNRMAITGAIRKLLVEKPGEFD 300 Query: 301 PRHFLKPSITYMQKVCAERYVQFGTAGNASKIKQVSLETFAAKYAKGELNAISKAAA 357 PR +LKP+ M+KVC R+V+FG+AG+A KIK +S T A +YA GEL+A A+A Sbjct: 301 PRAYLKPAKEAMRKVCQARFVEFGSAGHADKIKPMSTATMAKRYASGELHAKFGASA 357 Lambda K H 0.315 0.132 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 488 Number of extensions: 12 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 359 Length of database: 363 Length adjustment: 29 Effective length of query: 330 Effective length of database: 334 Effective search space: 110220 Effective search space used: 110220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate CCNA_03360 CCNA_03360 (tagatose-1,6-bisphosphate aldolase)
to HMM TIGR01521 (fba: fructose-bisphosphate aldolase, class II, Calvin cycle subtype (EC 4.1.2.13))
../bin/blast/fastacmd -i /tmp/list.11232.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11232.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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