Align phosphoglycerate dehydrogenase (EC 1.1.1.95) (characterized)
to candidate CCNA_03322 CCNA_03322 D-3-phosphoglycerate dehydrogenase
Query= BRENDA::Q9Z564 (529 letters) >FitnessBrowser__Caulo:CCNA_03322 Length = 526 Score = 378 bits (971), Expect = e-109 Identities = 214/528 (40%), Positives = 322/528 (60%), Gaps = 13/528 (2%) Query: 5 PVVLIAEELSPATVDAL---GPDFEIRHCNGADRAELLPAIADVDAILVRSATKVDAEAV 61 P VLIA++LSPA V+ G F+I+ G + EL+ I D D I +RS K+D + + Sbjct: 4 PRVLIADKLSPAAVEIFKNRGLAFDIK--TGLSKDELIAVIGDYDGIAIRSGAKLDKDVI 61 Query: 62 AAAKKLKVVARAGVGLDNVDVSAATKAGVMVVNAPTSNIVTAAELACGLIVATARNIPQA 121 AAA KL+V+ARAG+G+DNVD+ AAT G++V+N P N +T AE A ++ A AR IP A Sbjct: 62 AAANKLRVIARAGIGVDNVDIPAATAKGIVVMNTPFGNSITTAEHAIAMMFALARQIPAA 121 Query: 122 NAALKNGEWKRSKYTGVELAEKTLGVVGLGRIGALVAQRMSAFGMKVVAYDPYVQPARAA 181 + + + G+W+++++ GVEL KTLG++G G IG +VA R MKVVAYDP++ P RA Sbjct: 122 DVSTQGGKWEKNRFMGVELYAKTLGLIGAGNIGGIVADRALGLKMKVVAYDPFLSPERAV 181 Query: 182 QMGVKVLSLDELLEVSDFITVHLPKTPETLGLIGDEALRKVKPSVRIVNAARGGIVDEEA 241 +MGV+ + LDELL +D IT+H P T +T ++ E L K K V IVN ARGG+VDE A Sbjct: 182 EMGVEKVELDELLARADVITLHTPLTDKTRNILSAENLAKTKKGVMIVNCARGGLVDEAA 241 Query: 242 LYSALKEGRVAGAGLDVYAKEPCTDSPLFEFDQVVATPHLGASTDEAQEKAGIAVAKSVR 301 L L EG V GA DV+ EP ++PLF D+VVATPHLGAST+EAQE + VA+ V Sbjct: 242 LRKLLDEGHVGGAAFDVFTVEPAKENPLFGSDKVVATPHLGASTNEAQENVALQVAEQVS 301 Query: 302 LALAGELVPDAVNVQGGVIAED---VKPGLPLAERLGRIFTALAGEVAVRLDVEVYGEIT 358 L V +A+N + AE+ +KP + LAE++G + +D+ GE++ Sbjct: 302 DYLLTGAVTNALN-SPSITAEEAPKLKPFVALAEKIGAFAGQMVDFGVKAIDIAYEGEVS 360 Query: 359 QHDVKVLELSALKGVFEDVVDETVSYVNAPLFAQERGVEVRLTTSSESPEHRNVVIVRGT 418 +VK + +AL GV + ++ E ++ V+AP A+ERG+ V + SP + +++ V T Sbjct: 361 NLNVKPMTSAALAGVLKPMLAE-INMVSAPAIAKERGITVSESRQEVSPTYDSLMRVTIT 419 Query: 419 LSDGEEVSVSGTLAGPKHLQKIVAIGEYDVDLALADHMVVLRYEDRPGVVGTVGRIIGEA 478 G+ +AG +IV + ++D A + M+ + D+PG +G +G ++GEA Sbjct: 420 TEKGKRAFAGTVIAG---APRIVEVKGMELDAAFSPAMLYVNNLDKPGFIGALGMLLGEA 476 Query: 479 GLNIAGMQVARATVGGEALAVLTVDDTVPSGVLAEVAAEIGATSARSV 526 G+NIA + R + +A+A++ VD +G+LA++ A AR++ Sbjct: 477 GVNIATFNLGRVSADEDAIALVGVDQAPDAGLLAKIQALPHVKEARAL 524 Lambda K H 0.315 0.133 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 740 Number of extensions: 39 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 529 Length of database: 526 Length adjustment: 35 Effective length of query: 494 Effective length of database: 491 Effective search space: 242554 Effective search space used: 242554 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.6 bits)
Align candidate CCNA_03322 CCNA_03322 (D-3-phosphoglycerate dehydrogenase)
to HMM TIGR01327 (serA: phosphoglycerate dehydrogenase (EC 1.1.1.95))
../bin/blast/fastacmd -i /tmp/list.30298.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.30298.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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